Locus 11

Sequence ID sp_pn.0
Location 433,623 – 433,680
Length 57
Max. P 0.779574
window80 window81

overview

Window 0

Location 433,623 – 433,680
Length 57
Sequences 3
Columns 57
Reading direction reverse
Mean pairwise identity 92.40
Mean single sequence MFE -9.80
Consensus MFE -9.80
Energy contribution -9.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 1.00
SVM decision value 0.55
SVM RNA-class probability 0.779574
Prediction RNA

Download alignment: ClustalW | MAF

>sp_pn.0 433623 57 + 2038615
CUUUCGUCUUCUCCCAUCCAGACUAUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>sp_ag.0 748479 57 - 2160267
CCUUUGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>sp_mu.0 415754 57 - 2030921
UCUCAGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUUUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>consensus
CCUUAGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ ( -9.80 =  -9.80 +  -0.00) 
# Strand winner: forward (0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 433,623 – 433,680
Length 57
Sequences 3
Columns 57
Reading direction reverse
Mean pairwise identity 92.40
Mean single sequence MFE -9.80
Consensus MFE -9.80
Energy contribution -9.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 1.00
SVM decision value 0.55
SVM RNA-class probability 0.779574
Prediction RNA

Download alignment: ClustalW | MAF

>sp_pn.0 433623 57 + 2038615/0-57
CUUUCGUCUUCUCCCAUCCAGACUAUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>sp_ag.0 748479 57 - 2160267/0-57
CCUUUGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>sp_mu.0 415754 57 - 2030921/0-57
UCUCAGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUUUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ (  -9.80)
>consensus
CCUUAGUCUUCUCCCAUCCAGACUUUACUGUCGGUUGUGGAAUCUCACCACAUCAGC
...........(((((.((.(((......))))).)).)))................ ( -9.80 =  -9.80 +  -0.00) 
# Strand winner: forward (0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:51:32 2006