Locus 109

Sequence ID sy_au.0
Location 2,231,644 – 2,231,763
Length 119
Max. P 0.992059
window628 window629

overview

Window 8

Location 2,231,644 – 2,231,763
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.44
Mean single sequence MFE -42.82
Consensus MFE -32.90
Energy contribution -27.66
Covariance contribution -5.24
Combinations/Pair 1.50
Mean z-score -2.12
Structure conservation index 0.77
SVM decision value 2.30
SVM RNA-class probability 0.992059
Prediction RNA

Download alignment: ClustalW | MAF

>sy_au.0 2231644 119 - 2809422/0-120
UGUCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGUCGAUGGUAGUC-GAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGCAG
(((((((..((....(((((((((..((....))..))..((..(((......)))..))))))).)).(((((....)))-))......((((..(....)..))))))..))))))). ( -40.00)
>sy_sa.0 2306446 119 + 2516575/0-120
UGUCUGGUGACAAUGGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUC-GGACUUACGUUCCGCAAGAGUAGGACGUUGCCAGGCAA
(((((((..((..((((......))))..(((((((...(((.((((......((((((...)))))).(((((....)))-))......)))).))).)))))))..))..))))))). ( -43.70)
>sy_ha.0 2495317 119 + 2685015/0-120
UGUCUGGUGACAAUGGCAAGGAGGUCACACCUGUUCUCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUU-GGAUUUACGUUCCGCUAGAGUAGGACGUUGCCAGGCAA
(((((((..((..((((......))))..((((((((...((.((((......((((((...)))))).(((((....)))-))......)))).)).))))))))..))..))))))). ( -42.30)
>sp_mu.0 2008906 120 - 2030921/0-120
UGUUAAGUGAUGAUAGCCUAGGGGAGACACCUGUAUCCAUGCCGAACACAGCAGUUAAGCCCUAGCACGCCUGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAGGGUCGUCGCUUAGCAA
((((((((((((((..(((((((((.((....)).)))...))...(((((..(.(((.(((((((((.......)).))))))).))).)..)))))...)))))))))))))))))). ( -47.00)
>sp_ag.0 2064131 120 - 2160267/0-120
AGUUAAGUGAUAAUUGCCUAGGAGAUACACCUGUUCUCAUGCCGAACACAGAAGUUAAGCCCUAGAACGCCGGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAAGGUAGUCGCUUAGCAA
.((((((((((...(((((..((((.((....))))))........(((((......((((((..(((..(....)..))).)))))).....))))).....))))))))))))))).. ( -41.10)
>consensus
UGUCUGGUGACAAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUU_GGACUUACGUUCCGCGAGAGUAGGACGUUGCCAGGCAA
.((((((((((....(((((((((..((....))..))..((..(((......)))..))))))).)).((...........((((....))))..........))..)))))))))).. (-32.90 = -27.66 +  -5.24) 
# Strand winner: reverse (1.00)

alignment

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secondary structure

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dotplot

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Window 9

Location 2,231,644 – 2,231,761
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -29.86
Consensus MFE -18.20
Energy contribution -15.68
Covariance contribution -2.52
Combinations/Pair 1.44
Mean z-score -1.56
Structure conservation index 0.61
SVM decision value 0.33
SVM RNA-class probability 0.693761
Prediction RNA

Download alignment: ClustalW | MAF

>sy_au.0 2231644 117 - 2809422/40-160
ACUACCAUCGACGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUGACCUCCUUGCUAUAGUCACCAGACAUAUGAAUGUA---AUUUAUACAUUCAAAACUAGAUAGUAA
..(((.(((...((.((((((.(((...(((((.(((......))))))))..))).))))))))....(((....)))...((((((((---.....))))))))......))).))). ( -30.30)
>sy_sa.0 2306446 120 + 2516575/40-160
ACUACCAUCGGCGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUGACCUCCUUGCCAUUGUCACCAGACAAUGAAAUGUAUGAAAUUAUACAUUCAAAACUAGAUAGUAA
..(((.(((...((.((((((.(((...(((((.(((......))))))))..))).))))))))(((((((....))))))).((((((((....))))))))........))).))). ( -32.50)
>sy_ha.0 2495317 114 + 2685015/40-160
ACUACCAUCGGCGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGAGAACAGGUGUGACCUCCUUGCCAUUGUCACCAGACAAGAGAAUG------AUUAUACAUUCAAAACUAGAUAGUAA
..(((.(((((((...(((((.(((...(((((.(((.....))).)))))..))).))))))))).(((((....)))))..(((((------......))))).......))).))). ( -31.20)
>sp_mu.0 2008906 112 - 2030921/40-160
ACUACUUCAGGCGUGCUAGGGCUUAACUGCUGUGUUCGGCAUGGAUACAGGUGUCUCCCCUAGGCUAUCAUCACUUAACAAGCGUGA--------UCGCUCACUCACGAUUGAAUAGCUA
.(((.(((((.((((((((((....((..((((((((.....))))))))..))...))))))((.((((.(.((.....)).))))--------).)).....)))).))))))))... ( -32.10)
>sp_ag.0 2064131 113 - 2160267/40-160
ACUACUUCCGGCGUUCUAGGGCUUAACUUCUGUGUUCGGCAUGAGAACAGGUGUAUCUCCUAGGCAAUUAUCACUUAACUAUUGAGCC-------UUAUUCACUCAAAAUUGAAUAUCUA
.........((((((((...(((.(((......))).)))...)))))(((((.((..(....)..))...))))).........)))-------.((((((........)))))).... ( -23.20)
>consensus
ACUACCAUCGGCGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUGACCUCCUUGCCAUUGUCACCAGACAAGUGAAUG_______UUAUACAUUCAAAACUAGAUAGUAA
............((.((((((....((.(((((.(((.....))).))))).))...))))))))....................................................... (-18.20 = -15.68 +  -2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:59:17 2006