| Sequence ID | sy_sa.0 |
|---|---|
| Location | 1,173,711 – 1,173,734 |
| Length | 23 |
| Max. P | 0.999792 |
| Location | 1,173,711 – 1,173,734 |
|---|---|
| Length | 23 |
| Sequences | 3 |
| Columns | 25 |
| Reading direction | forward |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -8.47 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.99 |
| SVM decision value | 4.09 |
| SVM RNA-class probability | 0.999792 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
Download alignment: ClustalW | MAF
>sy_sa.0 1173711 23 - 2516575 AAAAGCUCUCCGAUU--UGGGAGAG .....((((((....--..)))))) ( -8.70) >sy_ha.0 1192533 25 - 2685015 AAAAGCUCUCCAAUCAAUGGGAGAG .....((((((........)))))) ( -8.30) >sy_au.0 1525304 25 + 2809422 AAAAGCUCUCCAUCAUCUAGGAGAG .....((((((........)))))) ( -8.40) >consensus AAAAGCUCUCCAAUA__UGGGAGAG .....((((((........)))))) ( -8.40 = -8.40 + 0.00)
| Location | 1,173,711 – 1,173,734 |
|---|---|
| Length | 23 |
| Sequences | 3 |
| Columns | 25 |
| Reading direction | reverse |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -8.40 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.99 |
| SVM decision value | 3.92 |
| SVM RNA-class probability | 0.999708 |
| Prediction | RNA |
| WARNING | Sequence 1 too short. |
| WARNING | Sequence 2 too short. |
| WARNING | Sequence 3 too short. |
Download alignment: ClustalW | MAF
>sy_sa.0 1173711 23 - 2516575 CUCUCCCA--AAUCGGAGAGCUUUU ((((((..--....))))))..... ( -8.20) >sy_ha.0 1192533 25 - 2685015 CUCUCCCAUUGAUUGGAGAGCUUUU ((((((........))))))..... ( -7.90) >sy_au.0 1525304 25 + 2809422 CUCUCCUAGAUGAUGGAGAGCUUUU ((((((........))))))..... ( -9.10) >consensus CUCUCCCA__AAUUGGAGAGCUUUU ((((((........))))))..... ( -8.33 = -8.33 + 0.00) # Strand winner: forward (0.71)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:59:12 2006