Locus 102

Sequence ID sp_ag.0
Location 919,731 – 919,836
Length 105
Max. P 0.999932
window584 window585

overview

Window 4

Location 919,731 – 919,836
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 72.70
Mean single sequence MFE -28.00
Consensus MFE -29.15
Energy contribution -27.41
Covariance contribution -1.75
Combinations/Pair 1.48
Mean z-score -3.69
Structure conservation index 1.04
SVM decision value 4.64
SVM RNA-class probability 0.999932
Prediction RNA

Download alignment: ClustalW | MAF

>sp_ag.0 919731 105 - 2160267
UAGGCAAUCAGUUUUCUGUACUGUACAGGCGACUGGUCGUUUAAUCUCUGUUGAAUUCUAGUUUCAUUAUAAAAUGUAAUGUAAUUUUUAACAAUAUUUGUUAUA
(((((.(((((((.((((((...)))))).))))))).))))).....(((((((....((((.((((((.....)))))).)))))))))))............ ( -23.70)
>sp_mu.0 1293416 104 + 2030921
UAGGCGGCCGACCUUCUGUACUCUAUGGGAGAUUGGUCGUUUAAUUUAUGUUGAAUUCUAGUUUCAUUAUAAAACGUGAUGUCAUUUU-GACAAUAUCUGUUAUA
(((((((((((.((((((((...)))))))).))))))))))).((((((.((((.......)))).))))))......((((.....-))))............ ( -27.90)
>sy_ha.0 32292 104 + 2685015
UAGGCUGCUAAUUCUCUGUAUUUUACAGGGGAUAAGUAGCCUAGUUUUUGUUGAAUUCGAUUAUUAUUAUAGUUUUUAAUGU-AUUUUCGACAAUUUCUAUUACA
(((((((((.((((((((((...)))))))))).)))))))))....((((((((......(((((..(....)..))))).-...))))))))........... ( -32.40)
>consensus
UAGGCAGCCAAUUUUCUGUACUCUACAGGAGAUUGGUCGUUUAAUUUAUGUUGAAUUCUAGUUUCAUUAUAAAAUGUAAUGU_AUUUU_GACAAUAUCUGUUAUA
((((((((((((((((((((...)))))))))))))))))))).....(((((((.........((((((.....)))))).....)))))))............ (-29.15 = -27.41 +  -1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 919,731 – 919,836
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 72.70
Mean single sequence MFE -28.00
Consensus MFE -29.15
Energy contribution -27.41
Covariance contribution -1.75
Combinations/Pair 1.48
Mean z-score -3.69
Structure conservation index 1.04
SVM decision value 4.64
SVM RNA-class probability 0.999932
Prediction RNA

Download alignment: ClustalW | MAF

>sp_ag.0 919731 105 - 2160267/0-105
UAGGCAAUCAGUUUUCUGUACUGUACAGGCGACUGGUCGUUUAAUCUCUGUUGAAUUCUAGUUUCAUUAUAAAAUGUAAUGUAAUUUUUAACAAUAUUUGUUAUA
(((((.(((((((.((((((...)))))).))))))).))))).....(((((((....((((.((((((.....)))))).)))))))))))............ ( -23.70)
>sp_mu.0 1293416 104 + 2030921/0-105
UAGGCGGCCGACCUUCUGUACUCUAUGGGAGAUUGGUCGUUUAAUUUAUGUUGAAUUCUAGUUUCAUUAUAAAACGUGAUGUCAUUUU-GACAAUAUCUGUUAUA
(((((((((((.((((((((...)))))))).))))))))))).((((((.((((.......)))).))))))......((((.....-))))............ ( -27.90)
>sy_ha.0 32292 104 + 2685015/0-105
UAGGCUGCUAAUUCUCUGUAUUUUACAGGGGAUAAGUAGCCUAGUUUUUGUUGAAUUCGAUUAUUAUUAUAGUUUUUAAUGU-AUUUUCGACAAUUUCUAUUACA
(((((((((.((((((((((...)))))))))).)))))))))....((((((((......(((((..(....)..))))).-...))))))))........... ( -32.40)
>consensus
UAGGCAGCCAAUUUUCUGUACUCUACAGGAGAUUGGUCGUUUAAUUUAUGUUGAAUUCUAGUUUCAUUAUAAAAUGUAAUGU_AUUUU_GACAAUAUCUGUUAUA
((((((((((((((((((((...)))))))))))))))))))).....(((((((.........((((((.....)))))).....)))))))............ (-29.15 = -27.41 +  -1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:58:40 2006