Locus 100

Sequence ID sy_au.0
Location 2,228,495 – 2,228,614
Length 119
Max. P 0.902307
window532

overview

Window 2

Location 2,228,495 – 2,228,614
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.04
Mean single sequence MFE -40.40
Consensus MFE -32.00
Energy contribution -25.88
Covariance contribution -6.12
Combinations/Pair 1.58
Mean z-score -1.32
Structure conservation index 0.79
SVM decision value 1.02
SVM RNA-class probability 0.902307
Prediction RNA

Download alignment: ClustalW | MAF

>sy_au.0 2228495 119 + 2809422/0-120
UAUGUCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGUCGAUGGUAGUC-GAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC
...((((((..((....(((((((((..((....))..))..((..(((......)))..))))))).)).(((((....)))-))......((((..(....)..))))))..)))))) ( -37.60)
>sy_ha.0 1800180 119 - 2685015/0-120
CUUGUCUGGUGACAAUGGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGCCGAUGGUAGUU-GGAUUUACGUUCCGCUAGAGUAGGACGUUGCCAGGC
...((((((..((..(((((.(((((.....)))....)).))))).........(((..((((..(((((((...)))....-(((.......)))))))))))..)))))..)))))) ( -40.40)
>sp_ag.0 1990104 120 - 2160267/0-120
AUAGUUAAGUGAUAAUUGCCUAGGAGAUACACCUGUUCUCAUGCCGAACACAGAAGUUAAGCCCUAGAACGCCGGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAAGGUAGUCGCUUAGC
...((((((((((...(((((..((((.((....))))))........(((((......((((((..(((..(....)..))).)))))).....))))).....))))))))))))))) ( -39.40)
>sp_mu.0 1873200 120 + 2030921/0-120
CUUGUUAAGUGAUGAUAGCCUAGGGGAGACACCUGUAUCCAUGCCGAACACAGCAGUUAAGCCCUAGCACGCCUGAAGUAGUUGGGGGUUGCCCCCUGUGAGAUAGGGUCGUCGCUUGGC
...(((((((((((((..(((((((((.((....)).)))...))...(((((..(.(((.(((((((((.......)).))))))).))).)..)))))...))))))))))))))))) ( -44.20)
>consensus
CUUGUCAAGUGACAAUAGCAAAGAGGACACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCCCCAGAACGCCGAAAGUAGUU_GGAGUUACCCCCCGCGAGAGAAGGACGUCGCCAGGC
...((((((((((......(((((((..((....))..))..((..(((......)))..)))))))((((.(....)......((((....))))))))..........)))))))))) (-32.00 = -25.88 +  -6.12) 
# Strand winner: reverse (1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Thu Apr 6 18:57:56 2006