Locus 6

Sequence ID nosto.0
Location 1,368,658 – 1,368,761
Length 103
Max. P 0.979297
window11

overview

Window 1

Location 1,368,658 – 1,368,761
Length 103
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 70.97
Mean single sequence MFE -39.27
Consensus MFE -38.37
Energy contribution -33.80
Covariance contribution -4.57
Combinations/Pair 1.87
Mean z-score -1.57
Structure conservation index 0.98
SVM decision value 1.83
SVM RNA-class probability 0.979297
Prediction RNA

Download alignment: ClustalW | MAF

>nosto.0 1368658 103 - 6413771
AUUGUUAAUA-------GACCUGGAUCUAUGCGACUGCAACGCCUAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACAGGAUGCUUGUGGUAGGCGUA-GUCUCCGGGU
..........-------.(((((((.(((((((.((((..........(((....)))(((....))).)))))..((((((...))))))....)))))-)..))))))) ( -37.70)
>proch.0 1322698 110 - 1709204
AUUGCUAAUAUGUUUUUGACUCGGCCUUUCGCGGUUUUAACGCCUAAACCUGGUCAGGACCGGAAGGUAGCAGCCACAAGGGAUGCUUGAGGCAGGCGAG-AUAACCGAGU
..................((((((..((((((.........((.....(((....)))(((....))).)).(((.((((.....)))).)))..)))))-)...)))))) ( -35.70)
>synec.0 1582777 109 - 2434428
AUUGCUAGCAUCAAGGGGACUCGGGCCAU-GCGGCUCGGACGCCCAAAUCUGGUCAGGACCGGAAGGGAGCAGCCACACGGGAUGCUCAGAGCAGGCGUG-GACUCCGGGU
..................(((((((((((-((.((((......((...((((((....)))))).))(((((.((.....)).))))).))))..)))))-).).)))))) ( -44.70)
>anava.0 5535667 103 - 6365727
AUUAUUAAUA-------GACCUGGAUCUAUGCGACUCCAACGCCUAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACAGGAUGCUUGUAGUAGGCGUA-GUCUCCGGGU
..........-------.(((((((.((((((.(((.((((((((.....((((....(((....)))....))))...))).)).))).)))..)))))-)..))))))) ( -33.50)
>synel.0 827132 102 + 2696255
---GCUGAGAUC-----GACUCGGACCUAUGUGGUCAGAACGCCCAAAUCCUGUCAGGACCGGAAGGUAGCAGCAGUACGGGAUGCUUUUGACAGGCGUA-GACUCCGGGU
---.........-----.(((((((.((((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..)))))-)..))))))) ( -38.40)
>gloev.0 1172823 104 + 4659019
AGUAUAAAAA-------AGCCUGGGCCCGUGCGGCUCGGACGCCCGAACCGUGUCAGGACCUGACGGUAGCAGCACUAAGGGAUGCUCUGGGCAGGCGCGUGGUUCCGGGU
..........-------.((((((((((((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..))))).)).))))))) ( -45.60)
>consensus
AUUGCUAAUA_______GACCCGGACCUAUGCGGCUCGAACGCCCAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACGGGAUGCUUGUGGCAGGCGUA_GUCUCCGGGU
..................(((((((..(((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..)))))....))))))) (-38.37 = -33.80 +  -4.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 5 20:05:40 2006