| Sequence ID | nosto.0 |
|---|---|
| Location | 979,232 – 979,308 |
| Length | 76 |
| Max. P | 0.999997 |
| Location | 979,232 – 979,308 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 91.93 |
| Mean single sequence MFE | -33.43 |
| Consensus MFE | -33.33 |
| Energy contribution | -31.78 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.22 |
| Mean z-score | -3.08 |
| Structure conservation index | 1.00 |
| SVM decision value | 5.47 |
| SVM RNA-class probability | 0.999988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 979232 76 + 6413771 GCCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGUAACGGGGAUUCGAAUUCCCCUGGGGGUACUA (((((((..((((((....))).)))((((((.......))))))...(((((.......)))))))))))).... ( -35.20) >proch.0 709643 76 - 1709204 GGCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGCGACAGGGGUUCGAAUCCCCUUGGGGCUAUUA (((((((((((((((....)))))...(((((.......)))))))).(((((.......)))))))))))).... ( -32.60) >synec.0 1699663 76 - 2434428 GCCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGCGACAGGGGUUCGAAUCCCCUUGGGGGUAUUA (((((((((((((((....)))))...(((((.......)))))))).(((((.......)))))))))))).... ( -32.90) >anava.0 5580254 76 + 6365727 GCCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGUAACGGGGAUUCGAAUUCCCCUGGGGGUACUA (((((((..((((((....))).)))((((((.......))))))...(((((.......)))))))))))).... ( -35.20) >synel.0 575308 76 - 2696255 GCCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGCGACAGGGGUUCGAAUCCCCUUGGGGGUAUUA (((((((((((((((....)))))...(((((.......)))))))).(((((.......)))))))))))).... ( -32.90) >gloev.0 2390457 76 - 4659019 GCCCCCAUCGUCUAGAGGCCCAGGACACCUCCCUUUCACGGAGGCGACACCGGUUCGAAUCCGGUUGGGGGUACUA (((((((((((((.((((.........))))((......)))))))).(((((.......)))))))))))).... ( -31.80) >consensus GCCCCCAUCGUCUAGAGGCCUAGGACACCUCCCUUUCACGGAGGCGACAGGGGUUCGAAUCCCCUUGGGGGUACUA (((((((..((((((....))).))).(((((.......)))))....(((((.......)))))))))))).... (-33.33 = -31.78 + -1.55)
| Location | 979,232 – 979,308 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 91.93 |
| Mean single sequence MFE | -33.78 |
| Consensus MFE | -35.92 |
| Energy contribution | -33.62 |
| Covariance contribution | -2.30 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.76 |
| Structure conservation index | 1.06 |
| SVM decision value | 6.17 |
| SVM RNA-class probability | 0.999997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 979232 76 - 6413771 UAGUACCCCCAGGGGAAUUCGAAUCCCCGUUACCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))...((((((.......))))))(((.(((....))))))..)))))). ( -33.40) >proch.0 709643 76 + 1709204 UAAUAGCCCCAAGGGGAUUCGAACCCCUGUCGCCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGCC .....(((((((((((.......)))))(.(((((((.......))))))).)((((....))))....)))))). ( -34.40) >synec.0 1699663 76 + 2434428 UAAUACCCCCAAGGGGAUUCGAACCCCUGUCGCCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))(.(((((((.......))))))).)((((....))))....)))))). ( -34.20) >anava.0 5580254 76 - 6365727 UAGUACCCCCAGGGGAAUUCGAAUCCCCGUUACCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))...((((((.......))))))(((.(((....))))))..)))))). ( -33.40) >synel.0 575308 76 + 2696255 UAAUACCCCCAAGGGGAUUCGAACCCCUGUCGCCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))(.(((((((.......))))))).)((((....))))....)))))). ( -34.20) >gloev.0 2390457 76 + 4659019 UAGUACCCCCAACCGGAUUCGAACCGGUGUCGCCUCCGUGAAAGGGAGGUGUCCUGGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))(.(((((((.......))))))).)((((....))))....)))))). ( -33.10) >consensus UAAUACCCCCAAGGGGAUUCGAACCCCUGUCGCCUCCGUGAAAGGGAGGUGUCCUAGGCCUCUAGACGAUGGGGGC .....(((((((((((.......)))))(.(((((((.......))))))).)((((....))))....)))))). (-35.92 = -33.62 + -2.30)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 5 20:05:39 2006