| Sequence ID | nosto.0 |
|---|---|
| Location | 185,098 – 185,180 |
| Length | 82 |
| Max. P | 0.999115 |
| Location | 185,098 – 185,180 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 88.35 |
| Mean single sequence MFE | -38.20 |
| Consensus MFE | -37.36 |
| Energy contribution | -34.92 |
| Covariance contribution | -2.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.98 |
| SVM decision value | 3.38 |
| SVM RNA-class probability | 0.999115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 185098 82 + 6413771 GCGGAACUGGCGGAAUUGGCAGACGCGCUAGAUUCAGGUUCUAGU-GCCGCAAGGCU-UCCGGGUUCAAGUCCCGGGUUCCGCA ((((((((.(.(((.(((...(((.(((((((.......))))))-(((....))).-...).)))))).)))).)))))))). ( -38.40) >anava.0 1777232 82 + 6365727 GCGGAACUGGCGGAAUUGGCAGACGCGCUAGAUUCAGGUUCUAGU-GCCGCAAGGCU-UCCGGGUUCAAGUCCCGGGUUCCGCA ((((((((.(.(((.(((...(((.(((((((.......))))))-(((....))).-...).)))))).)))).)))))))). ( -38.40) >synel.0 911177 84 + 2696255 GCGGAACUGGCGGAAUUGGUAGACGCGCUAGAUUCAGGUUCUAGUGGUUUCACGACUGUCCGGGUUCAAGUCCCGGGUUCCGCA (((((((((((((..(((..((((.(((((((.......)))))))))))..))))))))((((.......)))))))))))). ( -38.10) >gloev.0 3717168 82 + 4659019 GCGGAACUGGCGGAAUUGGUAGACGCGCAUGAUUCAGGUUCAUGU-GCCGCAAGGCG-UGGAGGUUCAAGUCCUCUGUUCCGCA (((((((.((.(((.((((....(((((((((.......))))))-(((....))))-)).....)))).))).))))))))). ( -37.90) >consensus GCGGAACUGGCGGAAUUGGCAGACGCGCUAGAUUCAGGUUCUAGU_GCCGCAAGGCU_UCCGGGUUCAAGUCCCGGGUUCCGCA (((((((..(((...........)))((((((.......)))))).(((....)))...(((((.......)))))))))))). (-37.36 = -34.92 + -2.44)
| Location | 185,098 – 185,180 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 88.35 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -25.00 |
| Energy contribution | -23.62 |
| Covariance contribution | -1.38 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 185098 82 - 6413771 UGCGGAACCCGGGACUUGAACCCGGA-AGCCUUGCGGC-ACUAGAACCUGAAUCUAGCGCGUCUGCCAAUUCCGCCAGUUCCGC .((((((((((((.......))))).-........(((-.(((((.......))))).((....)).......))).))))))) ( -29.20) >anava.0 1777232 82 - 6365727 UGCGGAACCCGGGACUUGAACCCGGA-AGCCUUGCGGC-ACUAGAACCUGAAUCUAGCGCGUCUGCCAAUUCCGCCAGUUCCGC .((((((((((((.......))))).-........(((-.(((((.......))))).((....)).......))).))))))) ( -29.20) >synel.0 911177 84 - 2696255 UGCGGAACCCGGGACUUGAACCCGGACAGUCGUGAAACCACUAGAACCUGAAUCUAGCGCGUCUACCAAUUCCGCCAGUUCCGC .((((((((((((.......)))))..((.((((......(((((.......))))))))).)).............))))))) ( -27.40) >gloev.0 3717168 82 - 4659019 UGCGGAACAGAGGACUUGAACCUCCA-CGCCUUGCGGC-ACAUGAACCUGAAUCAUGCGCGUCUACCAAUUCCGCCAGUUCCGC .(((((((...(((.(((........-(((...)))((-.(((((.......))))).))......))).)))....))))))) ( -26.30) >consensus UGCGGAACCCGGGACUUGAACCCGGA_AGCCUUGCGGC_ACUAGAACCUGAAUCUAGCGCGUCUACCAAUUCCGCCAGUUCCGC .((((((((((((.......)))))...(((....)))..(((((.......))))).(((...........)))..))))))) (-25.00 = -23.62 + -1.38)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 5 20:05:32 2006