| Sequence ID | nosto.0 |
|---|---|
| Location | 56,433 – 56,520 |
| Length | 87 |
| Max. P | 0.999401 |
| Location | 56,433 – 56,520 |
|---|---|
| Length | 87 |
| RNAz 1.0pre Sequences | 4 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 82.34 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -28.65 |
| Energy contribution | -28.77 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -4.18 |
| Structure conservation index | 0.86 |
| SVM decision value | 3.57 |
| SVM RNA-class probability | 0.999401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 56433 87 + 6413771 UCGCCUACAAUAGAUAUAGCGGAGACGCAUGUUUCCGUUCACUCCUCACACCACACUCCGCCCGGACUACUGUUCGGGCGGUUCCUU ............((...(((((((((....)))))))))...)).............((((((((((....))))))))))...... ( -31.00) >anava.0 3283406 87 + 6365727 UCGCCUACAAUAGAUAUAGCGGAGACGCAUGUUUCCGUUCACUCCUCACACCACACUCCGCCCGGACUACUGUUCGGGCGGUUCCUU ............((...(((((((((....)))))))))...)).............((((((((((....))))))))))...... ( -31.00) >synel.0 2417281 85 + 2696255 UCACUUAGAAUGAGGUUAGCGGAGACAAAUGUUUCCGUUCACUCCUCACACCACACUUCGCCCGGGCAAC-GCUCGGGC-GUUUUUU ..........(((((..(((((((((....)))))))))....)))))..........(((((((((...-))))))))-)...... ( -35.50) >gloev.0 3727265 84 - 4659019 UCGCAUAGAAUGAAGGAAGCGGAGACGCAUGUUUCCGUUCACUCCUCACACCAUGUUCCGCCCGGUCG---CUCCGGGCGGUUUCUU ..((((.(..(((.((((((((((((....)))))))))...))))))..).)))).((((((((...---..))))))))...... ( -35.70) >consensus UCGCCUACAAUAAAGAUAGCGGAGACGCAUGUUUCCGUUCACUCCUCACACCACACUCCGCCCGGACUAC_GUUCGGGCGGUUCCUU .................(((((((((....)))))))))..................((((((((((....))))))))))...... (-28.65 = -28.77 + 0.12)
| Location | 56,433 – 56,520 |
|---|---|
| Length | 87 |
| Sequences | 4 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 82.34 |
| Mean single sequence MFE | -32.47 |
| Consensus MFE | -24.19 |
| Energy contribution | -25.87 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 56433 87 - 6413771 AAGGAACCGCCCGAACAGUAGUCCGGGCGGAGUGUGGUGUGAGGAGUGAACGGAAACAUGCGUCUCCGCUAUAUCUAUUGUAGGCGA .......((((...(((((((....(((((((((((.(((.....(....)....))))))).)))))))....))))))).)))). ( -31.90) >anava.0 3283406 87 - 6365727 AAGGAACCGCCCGAACAGUAGUCCGGGCGGAGUGUGGUGUGAGGAGUGAACGGAAACAUGCGUCUCCGCUAUAUCUAUUGUAGGCGA .......((((...(((((((....(((((((((((.(((.....(....)....))))))).)))))))....))))))).)))). ( -31.90) >synel.0 2417281 85 - 2696255 AAAAAAC-GCCCGAGC-GUUGCCCGGGCGAAGUGUGGUGUGAGGAGUGAACGGAAACAUUUGUCUCCGCUAACCUCAUUCUAAGUGA ......(-(((((.((-...)).)))))).((((.(((....((((((((.(....).)))).))))....))).))))........ ( -29.90) >gloev.0 3727265 84 + 4659019 AAGAAACCGCCCGGAG---CGACCGGGCGGAACAUGGUGUGAGGAGUGAACGGAAACAUGCGUCUCCGCUUCCUUCAUUCUAUGCGA ......((((((((..---...))))))))..(((((.((((((...(((((((.((....)).)))).))))))))).)))))... ( -36.20) >consensus AAGAAACCGCCCGAAC_GUAGUCCGGGCGGAGUGUGGUGUGAGGAGUGAACGGAAACAUGCGUCUCCGCUAUAUCCAUUCUAGGCGA ......(((((((.((....)).))))))).((((((((.(((..(((...(....).)))..)))))))))))............. (-24.19 = -25.87 + 1.69)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 5 20:05:30 2006