| Sequence ID | nosto.0 |
|---|---|
| Location | 1,368,658 – 1,368,761 |
| Length | 103 |
| Max. P | 0.979178 |
| Location | 1,368,658 – 1,368,761 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 71.96 |
| Mean single sequence MFE | -39.27 |
| Consensus MFE | -38.30 |
| Energy contribution | -33.20 |
| Covariance contribution | -5.10 |
| Combinations/Pair | 1.87 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>nosto.0 1368658 103 + 6413771 AUUGU-UAAUAGACCUGGAUCUAUGCGACUGCAACGCCUAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACAGGAUGCUUGUGGUAGGCGUA-GUCUCCGGGU .....-......(((((((.(((((((.((((..........(((....)))(((....))).)))))..((((((...))))))....)))))-)..))))))) ( -37.70) >anava.0 5535667 103 + 6365727 AUUAU-UAAUAGACCUGGAUCUAUGCGACUCCAACGCCUAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACAGGAUGCUUGUAGUAGGCGUA-GUCUCCGGGU .....-......(((((((.((((((.(((.((((((((.....((((....(((....)))....))))...))).)).))).)))..)))))-)..))))))) ( -33.50) >synel.0 827132 102 - 2696255 GCUG--AGAUCGACUCGGACCUAUGUGGUCAGAACGCCCAAAUCCUGUCAGGACCGGAAGGUAGCAGCAGUACGGGAUGCUUUUGACAGGCGUA-GACUCCGGGU ....--......(((((((.((((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..)))))-)..))))))) ( -38.40) >gloev.0 1172823 104 - 4659019 AGUAU-AAAAAAGCCUGGGCCCGUGCGGCUCGGACGCCCGAACCGUGUCAGGACCUGACGGUAGCAGCACUAAGGGAUGCUCUGGGCAGGCGCGUGGUUCCGGGU .....-......((((((((((((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..))))).)).))))))) ( -45.60) >synec.0 1582777 103 + 2434428 AGCAU-CAAGGGGACUCGGGCCAUGCGGCUCGGACGCCCAAAUCUGGUCAGGACCGGAAGGGAGCAGCCACACGGGAUGCUCAGAGCAGGCGUG-GACUCCGGGU .....-.......(((((((((((((.((((......((...((((((....)))))).))(((((.((.....)).))))).))))..)))))-).).)))))) ( -44.70) >proch.0 1322698 104 + 1709204 AAUAUGUUUUUGACUCGGCCUUUCGCGGUUUUAACGCCUAAACCUGGUCAGGACCGGAAGGUAGCAGCCACAAGGGAUGCUUGAGGCAGGCGAG-AUAACCGAGU ............((((((..((((((.........((.....(((....)))(((....))).)).(((.((((.....)))).)))..)))))-)...)))))) ( -35.70) >consensus AGUAU_UAAUAGACCUGGACCUAUGCGGCUCGAACGCCCAAACCUUGUCAGGACCGGAAGGUAGCAGCAACACGGGAUGCUUGUGGCAGGCGUA_GUCUCCGGGU ............(((((((..(((((.((((((((((((.....((((....(((....)))....))))...))).)).)))))))..)))))....))))))) (-38.30 = -33.20 + -5.10)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 19 19:58:24 2006