Locus 6

Sequence ID	nosto.0
Location	955,572 – 955,609
Length	37
Max. P	0.598456

overview

Window 0

Location	955,572 – 955,609
Length	37
Sequences	5
Columns	37
Reading direction	forward
Mean pairwise identity	92.70
Mean single sequence MFE	-8.72
Consensus MFE	-7.10
Energy contribution	-7.10
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.40
Structure conservation index	0.81
SVM decision value	0.13
SVM RNA-class probability	0.598456
Prediction	RNA
WARNING	Sequence 1 too short.
WARNING	Sequence 2 too short.
WARNING	Sequence 3 too short.
WARNING	Sequence 4 too short.
WARNING	Sequence 5 too short.

Download alignment: ClustalW | MAF

>nosto.0 955572 37 + 6413771
UCAGUCCUCUGCUCUACCAACUGAGCUAUCCCGGCUU
..((((....((((........))))......)))). (  -7.50)
>anava.0 5557850 37 + 6365727
UCAGUCCUCUGCUCUACCAACUGAGCUAUCCCGGCUU
..((((....((((........))))......)))). (  -7.50)
>gloev.0 1236180 37 - 4659019
UCAGUCCGCUGCUCUACCAACUGAGCUAUCCCGGCGC
...(.(((..((((........)))).....)))).. (  -8.50)
>synec.0 536121 37 - 2434428
UCAGUCGCCUGCUCUACCAACUGAGCUAUCCCGGCAC
...((((...((((........)))).....)))).. ( -10.00)
>proch.0 300929 37 + 1709204
UCAGUCGCCUGCUCUACCAACUGAGCUAUCCCGGCUC
..(((((...((((........)))).....))))). ( -10.10)
>consensus
UCAGUCCCCUGCUCUACCAACUGAGCUAUCCCGGCUC
...(((....((((........))))......))).. ( -7.10 =  -7.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Wed Apr 19 19:58:22 2006