J02194. Fujinami sarcoma virus LOCUS ACF 4788 bp ss-RNA linear VRL 27-APR-1993 DEFINITION Fujinami sarcoma virus (unintegrated circular), complete genome. ACCESSION J02194 K01827 K01828 VERSION J02194.1 GI:209686 KEYWORDS c-myc proto-oncogene; complete genome; fps oncogene; polyprotein. SOURCE Fujinami sarcoma virus ORGANISM Fujinami sarcoma virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 4788) AUTHORS Shibuya,M. and Hanafusa,H. TITLE Nucleotide sequence of Fujinami sarcoma virus: evolutionary relationship of its transforming gene with transforming genes of other sarcoma viruses JOURNAL Cell 30 (3), 787-795 (1982) MEDLINE 83050964 PUBMED 6291784 REFERENCE 2 (bases 1832 to 1881; 2851 to 2902) AUTHORS Carlberg,K., Chamberlin,M.E. and Beemon,K. TITLE The avian sarcoma virus PRCII lacks 1020 nucleotides of the fps transforming gene JOURNAL Virology 135 (1), 157-167 (1984) MEDLINE 84225820 PUBMED 6328746 COMMENT Original source text: FSV (Fujinami sarcoma virus), unintegrated circular DNA [1],[2]. The sequence of 1182 amino acids was deduced from the Fujinami sarcoma virus (FSV) transforming protein p130, the product of gag-fps fused gene. p130 is highly homologous to the gag-fes sequence of feline sarcoma virus (see separate entries), and is 40% homologous in the 280 residue carboxyl end (including the phosphoacceptor tyrosine residue) of Rous sarcoma virus p60 protein. FEATURES Location/Qualifiers source 1..4788 /organism="Fujinami sarcoma virus" /mol_type="genomic RNA" /db_xref="taxon:11885" LTR 1..347 /note="5' LTR" repeat_region 247..267 /note="5' terminal repeat" CDS 626..4174 /note="p130 polyprotein" /codon_start=1 /protein_id="AAA42402.1" /db_xref="GI:209687" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSQLQKEGLLMSLSD LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGETTVQRDTKMAPEETATPKTVGTSCYHCGTAIGCN CATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGRTGLAPGPALTDW ARIREELASTGPPMVAMPVVIKTEGPAWTPLEPKLIAGLAGAVGAGGLRSPIAVAGVE ALMSSPLLPHDVTNPMRVILGPAPHALWMDAWAASGQLHRPQPQEHTSTSAAAGTWRL TQASESRHRLPHCSAAPSHQDHSAMGFGPELWCPKGHTELLRLQDSELRLLELMKKWM SQRAKSDREYAGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLR RHAEELAAGPLAKLSILIRDKQQLRKVFSEQWQQLSQEYAWTTQQEVEKLKAQYRSLV RDSTQAKRKYQEASKDKEREKAKEKYVRSLSKLYALHNQYVLAVQAAALHHHHHYQRA LPTLHESLYSLQQEMVLVLKEILGEYCSITSLVQEDVLAIHQKVAHAVEMIDPATEYS SFVQCHRYDSEVPPAVTFDESLLEEAENLEPGELQLNELTIESVQHSLTSIEEELLAS RKAVSSKEQRVWELQVELRGEELALSPGERVHLLGKRQGLREAQQQLQGLVCAQAKLQ AQRDMLANKLAELGSEEPPPALPLQEDRQSARSTDQERSGVTALKTIKNHISGIFSPR FSLPPPVPLIPEVQKPLCQQAWYHGAIPRSEVQELLKYSGDFLVRESQGKQEYVLSVL WDGQPRHFIIQAADNLYRLEDDGLPTIPLLIDHLLQSQRPITRKSGIVLTRAVLKDKW VLNHEDVLLGERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILK QCNHPNIVRLIGVCTQKQPIYIVMELVQGGDFLSFLRSKGPRLKMKKLIKMMENAAAG MEYLESKHCIHRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQIPVKWTA PEALNYGWYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLEPPEQCP EDVYRLMQRCWEYDPHRRPSFGAVHQDLIAIRKRHR" mat_peptide 629..1549 /product="gag protein" mat_peptide 1550..4171 /product="v-fps transforming protein" LTR 4442..4788 /note="3' LTR" repeat_region 4688..4708 /note="3' terminal repeat" ORIGIN 5' end of proviral genome; 768 bp upstream of SmaI site. 1 gatgttgcca gttagtcatc attgccactt agtcatcatt acataagaca gtctaaagtc 61 ctaaaaagga aaaacaagac atctcggatg tcattggctg caaccagtaa ggaagtagtg 121 gcgtgaggat cacccgatgg gtgtaaccca gaaggccatt ggtggcagct gatgtcgtga 181 tatcacctta tgggcaaggc taaagctgtg cataactata taagccattg taaccttcta 241 ataaacgcca ttttaccatt caccacattg gtgtgcacct gggtagatgg acagaccgtt 301 gagtccctaa cgattgcgaa cacctgaatg aagcggaagg cttcatttgg tgaccccgac 361 gtgatcgtta gggaatagtg gtcggccaca ggcggcgtgg cgatcctgcc ctcatccgtc 421 tcgcttaatc ggggagcgga cgatgaccct agcagagggg gctgcggctt aggagggcag 481 aagctgagtg acgtcggagg gagctccacg gccgggggcc aagataacct accgagaact 541 cagagagtcg ttggaagacg ggaaggaagc ccaacgactg agcagtccac cccaggcgtg 601 attctggtcg cccggtggat caagcatgga agccgtcata aaggtgattt cgtccgcgtg 661 taaaacctat tgcgggaaaa cctctccttc taagaaggaa ataggggcca tgttgtccca 721 gttacaaaag gaagggttgc ttatgtccct ctcagactta tattccccgg ggtcctggga 781 tcccattacc gcggcactca cacagcgggc gatggtactt gggaaatcgg gagagttaaa 841 aacctgggga ttggttttgg gggcattgaa ggcggcccga gaggaacagg ttacatctga 901 gcaagcaaag ttttggttgg gattaggggg agggagggtc tctcccccag gtccggagtg 961 catcgagaaa ccagcaacgg agcggcgaat cgacaaggga gaaacaactg tgcagcgaga 1021 tacgaagatg gcgccggagg aaacggccac acctaaaacc gttggcacat cctgctatca 1081 ttgcggaaca gctattggct gtaattgcgc cacagcctcg gctcctcctc ctccttatgt 1141 ggggagtggt ttgtatcctt ccctggcggg ggtgggagag cagcagggcc aggggggtga 1201 cacacctcgg ggggcggaac agccaagggc ggagccaggg cgcacgggtc tggcccctgg 1261 gccggccctg actgactggg caaggattag ggaggagctt gcgagtacag gtccgcccat 1321 ggtggccatg cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa 1381 attgatcgca ggactagctg gtgcggtcgg ggccgggggc ttgcgatctc cgatcgctgt 1441 ggcaggggtg gaggcgctta tgtcctcccc gctgctgccg catgacgtca cgaatccaat 1501 gagagttatt ttaggacccg ccccacatgc cttatggatg gacgcttggg ctgcgtcagg 1561 tcagttgcac cggccccaac cccaggaaca caccagcacc agcgctgcag cggggacctg 1621 gcggctcact caggcttcgg agtcgcggca caggctgccc cactgctctg cagccccatc 1681 ccaccaggat cacagtgcca tgggctttgg gccggagctg tggtgcccga aggggcacac 1741 tgagctgctg cggctgcagg acagcgagtt gcgcctcctg gagctgatga agaagtggat 1801 gtcacagcgt gctaagagcg accgggagta cgcggggatg ctgcaccaca tgttctctca 1861 gctggagaaa caggagggcc tgggacatct ccgtgccacc gaccacagca gccagatcgg 1921 ggagtcgtgg tgggttctgg caagccagac tgagacactg agccagacgc tgcggcggca 1981 cgcggaggag ctggcagcgg ggccgctggc caagctgagc atactgatcc gtgacaagca 2041 gcagcttcgc aaggtcttca gtgagcagtg gcagcagctc agccaggagt acgcctggac 2101 cacacagcag gaagttgaga agctgaaggc acagtaccgc agcctggtgc gtgacagcac 2161 ccaggccaag cgcaagtacc aggaggccag caaagacaag gagcgggaaa aggcgaagga 2221 aaagtacgtg cgcagcctgt cgaagctcta tgccttgcac aaccagtacg tgctggctgt 2281 gcaggcggct gcgttgcacc accaccatca ctaccagcgt gctctgccca ccctgcacga 2341 gtccctctac agcctgcagc aggagatggt ccttgttttg aaggagattc ttggggagta 2401 ctgtagcatc accagtctgg tgcaggagga cgtgctggcc atccaccaga aggttgccca 2461 cgccgtcgag atgatcgacc ccgccactga gtacagcagc tttgttcagt gccacaggta 2521 cgactctgag gtaccaccgg cagtgacctt tgatgagagc ttgctggagg aggcagagaa 2581 cctggagcca ggggagctgc agctgaatga gctgaccatc gagagcgtgc aacactccct 2641 gacatccatt gaggaggagc tgttggccag caggaaggca gtgagcagca aggagcagcg 2701 ggtgtgggag ctgcaggttg agctgcgggg cgaggagctg gcactcagcc ctggggagcg 2761 ggtgcacttg ctgggcaagc ggcaggggct gcgggaggcc cagcagcagc tgcagggctt 2821 ggtctgtgct caggccaagc tgcaggcaca gcgggatatg ctggccaaca agctggcaga 2881 gctgggctct gaggagcccc ctcccgcctt gcccctgcag gaggaccggc agtcagcgcg 2941 ctccacggat caggagcgca gtggggtgac tgcgctgaag accatcaaga accacatctc 3001 gggcatcttc agtcccaggt tctcgctgcc acctcccgtg cccctcatcc cggaggtgca 3061 gaagccgctg tgccagcagg cctggtacca cggggccatc ccgcgctcgg aggtgcagga 3121 gctgctgaaa tacagcggag acttcctggt gcgggagagc caggggaagc aggagtatgt 3181 gctcagcgtg ctgtgggatg ggcagccccg gcacttcatc atccaggctg ctgacaacct 3241 gtacaggctg gaagacgatg gccttcccac catcccgctg ctcatcgacc acctgctgca 3301 gagccagcgg cccatcaccc gcaagagcgg catcgtcctg accagagccg tgctcaagga 3361 caagtgggtg ctcaaccatg aggacgtgct gctgggggag cgcattggcc gggggaactt 3421 cggggaggtg ttcagcggcc gcctgcgtgc tgacaacacc cccgtggcgg tgaaatcctg 3481 ccgggaaacc ctgccgcccg agctgaaggc caagttcctg caggaagcca ggatcctcaa 3541 gcagtgcaac catcccaaca tcgtccggct catcggcgtc tgcacccaga agcagcccat 3601 ttacatcgtc atggagctgg tgcagggagg ggacttcctg agcttcctgc gcagcaaggg 3661 gccccgcctg aagatgaaga agctgatcaa gatgatggag aatgccgcgg cgggcatgga 3721 gtacctggaa agcaagcact gcatccacag ggacctggct gcccgcaact gcctggtgac 3781 agaaaagaac accctgaaaa tcagcgactt tgggatgtcg cggcaggagg aggatggtgt 3841 ctatgcctcc acggggggca tgaagcagat ccccgtgaaa tggactgccc ccgaggctct 3901 gaattacggc tggtacagct cggagagcga cgtgtggagc tttgggatcc tgctgtggga 3961 agccttcagc ctgggcgccg tgccctacgc caacctcagc aaccagcaga cgcgcgaggc 4021 catcgagcag ggcgtgcggc tggagccccc ggagcagtgc cccgaggacg tgtaccgcct 4081 gatgcagcgc tgctgggagt acgaccctca caggcggccg agcttcggcg ccgtccacca 4141 ggacctcatc gccatccgca aacggcaccg ctgagcggct gcgcccgccc gggcggcggg 4201 gccggagagc ggcggggccg gaggcgcgga gggccgcggt gcgctgctgc gaaataaaag 4261 tcggctctgc ggaaatttga ctgagattag gcttttgcgc tgtttcgcga tgtacgggtc 4321 aggagtgagt agtataactg aggggaccat ggtatgtata ggcgctaggc ggggcttcgg 4381 ttgtacgcgg ttaggggtcc cctcaggaag tagtaaatgc gctttcgcat agggaggggg 4441 agatgttgcc agttagtcat cattgccact tagtcatcat tacataagac agtctaaagt 4501 cctaaaaagg aaaaacaaga catctcggat gtcattggct gcaaccagta aggaagtagt 4561 ggcgtgagga tcacccgatg ggtgtaaccc agaaggccat tggtggcagc tgatgtcgtg 4621 atatcacctt atgggcaagg ctaaagctgt gcataactat ataagccatt gtaaccttct 4681 aataaacgcc attttaccat tcaccacatt ggtgtgcacc tgggtagatg gacagaccgt 4741 tgagtcccta acgattgcga acacctgaat gaagcggaag gcttcatt //