Z46390 Avian leukosis virus HPRS-103 (subgroup J) LOCUS ALV103J 7841 bp DNA linear VRL 05-APR-1995 DEFINITION Avian leukosis virus HPRS-103 (subgroup J) complete proviral sequence. ACCESSION Z46390 VERSION Z46390.1 GI:735912 KEYWORDS capsid protein p27; env gene; envelope protein; gag protein; gp37; gp85; integrase; matrix protein p19; nucleocapsid protein p12; P10; P2; pol protein; protease p15; reverse transcriptase; xsr element. SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7841) AUTHORS Bai,J., Payne,L.N. and Skinner,M.A. TITLE HPRS-103 (exogenous avian leukosis virus, subgroup J) has an env gene related to those of endogenous elements EAV-0 and E51 and an E element found previously only in sarcoma viruses JOURNAL J. Virol. 69 (2), 779-784 (1995) MEDLINE 95115129 PUBMED 7815543 REFERENCE 2 (bases 1 to 7841) AUTHORS Skinner,M.A. TITLE Direct Submission JOURNAL Submitted (31-OCT-1994) Michael A. Skinner, Division of Molecular Biology, Institute for, Animal Health, Compton, Near Newbury, Berks., RG16 0NN, U. K FEATURES Location/Qualifiers source 1..7841 /organism="Avian leukosis virus" /proviral /mol_type="genomic DNA" /strain="HPRS-103 (subgroup J)" /db_xref="taxon:11864" /clone="recL5" LTR 1..325 /note="5' LTR" repeat_region 1..224 /standard_name="U3" /rpt_type=DIRECT 5'UTR 225..603 repeat_region 225..245 /standard_name="R" /rpt_type=DIRECT repeat_region 246..325 /standard_name="U5" /rpt_type=DIRECT gene join(604..621,5302..6993) /gene="env" CDS join(604..621,5302..6993) /gene="env" /codon_start=1 /product="envelope protein subgroup J" /protein_id="CAA86525.1" /db_xref="GI:735914" /db_xref="GOA:Q64997" /db_xref="TrEMBL:Q64997" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPATSKKDPEKTPLLPSRGY FFFQMILVCVVIISVVPGVGGVHLLQQPGNVWVTWANKTGRTDFCLSLQSATSPFRTC LIGIPQYPLNTFKGYVTNVTACDNNTDLASQTACLIKALNTTLPWDPQELDILGSQMI KNGTTRTCVTFGSVCYKENNRSRVCHNFDGNVNGTGGAERELRDFIAKWKSDDLLIRP YVNQSWTMVSPINVESFSISRRYCGFTSNETRYYRGDLSNWCSSKRGEWSAGYSNGTK CSSNTTGCGGNCTTEWNYYAYGFTFGEQPEVLWNNGTAKALPPGIFLICGDRAWQGIP RNALGGPCYLGQLTMLSPNFTTWITYGPNITGHHRSRRSLSRLSPDCGDELQLWSVTA RIFASFFAPGIAAAQALKEIERLACWSVKQANLTSLILNAMLEDTSSIRHAVLQNRAA IDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFTRT FGDLGRWLAKGVKTLLFALLVIACLLAIIPCVIKCFQDCLSRTMNQFMDERIRYHRIR EQL" mat_peptide 5476..6399 /gene="env" /product="gp85 (SU) domain of env (sugroup J)" mat_peptide 6400..6990 /gene="env" /product="gp37 (TM) domain of env (sugroup J)" CDS 604..2709 /gene="env" /codon_start=1 /product="gag proteins" /protein_id="CAA86524.1" /db_xref="GI:735913" /db_xref="GOA:Q64996" /db_xref="TrEMBL:Q64996" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDTGEEARETTVQQDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGLAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNARQCRKRDGNQGQRPGRGLSSG PWPAPEPPAVSLAMTMEHRDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" mat_peptide 604..1068 /gene="env" /product="matrix protein, MA p19" mat_peptide 1069..1134 /gene="env" /product="p2" mat_peptide 1135..1320 /gene="env" /product="p10" mat_peptide 1321..2037 /gene="env" /product="capsid protein, CA p27" mat_peptide 2068..2334 /gene="env" /product="nucleocapsid protein, NC p12" mat_peptide 2335..2706 /gene="env" /product="protease, PR p15" intron 622..5301 /gene="env" mat_peptide 2727..5348 /gene="env" /product="pol proteins" mat_peptide 2727..4442 /gene="env" /product="reverse transcriptase beta-subunit, RT p68" mat_peptide 4443..5300 /gene="env" /product="integrase, IN p32" misc_feature 6796..7015 /note="insertion encoding transmembrane segment of TM" 3'UTR 6994..7741 misc_feature 7016..7225 /note="redundant, non-functional TM" misc_feature 7266..7358 /note="DR1" misc_feature 7359..7505 /standard_name="E or XSR element" LTR 7517..7841 /note="3' LTR" repeat_region 7517..7742 /standard_name="U3" /rpt_type=DIRECT repeat_region 7743..7763 /standard_name="R" /rpt_type=DIRECT repeat_region 7764..7841 /standard_name="U5" /rpt_type=DIRECT ORIGIN 1 tgtagtgtta tgcaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggaaga 61 aaaaggcact gtacacgtcg attggtggaa gtaaggtggt atgatcatgg tatgatcgtg 121 ccttattagg aaggcaacag acgggtctta catggattgg acgaactcct tagttccgca 181 ttacagagat attgtattta agtgcctagc ccgacacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc ggaccgtcga ttccctgaca actacgagca 301 cctgcatgaa gcggatggct tcatttggtg accccgatgt gatagttagg gaatagtggt 361 cggccacaga cggcgtggcg atcctgtcct catccgtctc gcttattcgg ggagcgggcg 421 atgaccctag tagagggggc tgcggcttag gagggcagaa gctgagtggc gtcggaggga 481 gctctactgc agggagccaa cataccctac cgagcactca gagagtgctt ggaagacggc 541 aaggaagccc gacgactgag cggtccgccc cagacgtgat tctggtcgcc cggaggatca 601 agtatggaag ccgtcataaa ggtgatttcg tccgcgtgta aaacctattg cggaaaaacc 661 tctccttcta agaaggaaat cggggccatg ttgtccctct tacaaaagga agggttgctt 721 atgtctccct cagacttata ctccccgggg tcctgggatc ccatcactgc ggcgctctcc 781 cagcgggcaa tggtacttgg aaaatcgggg gagttaaaaa cctggggatt ggtgttgggg 841 gcattgaagg cggctcgaga ggaacaggtt acatctgagc aagcaaagtt ttggttgggg 901 ctagggggag ggagggtctc tcccccaggt ccggagtgta tcgaaaaacc agcaacggag 961 cggcggatcg acacagggga ggaagcgaga gagacaactg tgcagcaaga tgcgaagatg 1021 gcgccggagg aaacggccac acctaaaacc gttggcacat cctgctatca ttgcggaaca 1081 gctattggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt ggggagtggt 1141 ttgtatcctt ccctggcggg ggtgggagag cagcagggcc aggggggtga cacacctcgg 1201 ggggcggaac agccaagggc ggagccaggg cacgcgggtc tggcccctgg gccggccctg 1261 actgactggg caaggatcag ggaggagctt gcgagtacag gtccgcccgt ggtggccatg 1321 cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa attgatcaca 1381 agactggctg atacggtcag gaccaagggc ttacgatccc cgatcactat ggcggaggtg 1441 gaagcgctta tgtcctcccc gctgctgccg catgacgtta cgaatctaat gagagttatt 1501 ttaggacctg ccccatatgc cttgtggatg gacgcttggg gtgtccaact acagacggtt 1561 atagcggcag ccactcgcga cccccgacac ccagcgaatg gtcaagggcg gggggaacgg 1621 actaatttgg atcgcttaaa gggtttagct gatgggatgg tgggcaaccc gcagggtcag 1681 gccgcattat taagaccggg ggaattggtt gctattacgg cgtcggctct ccaggcattt 1741 agagaggttg cccggctggc ggaacctgct ggtccatggg cggacattac gcagggacca 1801 tctgagtcct ttgttgattt tgccaatcgg cttataaagg cggttgaggg gtcagatctc 1861 ccgccttccg cgcgagctcc ggtgatcatt gactgcttta ggcagaagtc acagccagat 1921 atccagcagc ttatacgggc agcaccctcc acgctgacca ccccaggaga gataatcaaa 1981 tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc cgcggccatg 2041 tcgtctgcta tccagccctt agttatggca gtagtcaata gagagaggga tggacaaact 2101 gggtcgggtg gtcgtgcccg agggctctgc tacacttgtg gatccccggg acattatcag 2161 gcgcagtgcc cgaaaaaacg aaaatcagga aacagccgtg agcgatgtca gttgtgtgac 2221 gggatgggac acaacgctag acagtgtagg aagcgggatg gcaaccaggg ccaacgccca 2281 ggaagaggtc tctcttcggg gccgtggccc gcccctgagc cgcctgccgt ctcgttagcg 2341 atgacaatgg aacatagaga tcgccccttg gttagggtca ttctgactaa cactgggagt 2401 catccggtca aacagcgctc ggtgtatatc accgcgctgt tggactccgg agcggacatc 2461 actattattt cggaggagga ctggcctact gattggccgg tggtggacac cgcgaaccca 2521 cagatccatg gcataggagg gggaattccc atgcgaaaat ctcgtgacat gatagagtta 2581 ggggttatta accgagacgg gtctttggag cgacccctgc tcctcttccc cgcagtagct 2641 atggttagag ggagtatcct gggaagagat tgtctgcagg gcctagggct ccgcttgaca 2701 aatttatagg gagggccact gttcttactg ttgcgctaca tctggctatt ccgctcaaat 2761 ggaagccaga ccacacgcct gtgtggattg accagtggcc ccttcctgag ggtaaacttg 2821 tagcgctaac gcaattagtg gaaaaagaat tacagttagg acatatagaa ccttcactta 2881 gttgttggaa cacacctgtc tttgtgatcc ggaaggcttc tgggtcttat cgtttattgc 2941 atgacttgcg cgctgttaac gccaagcttg ttccttttgg ggccgtccaa cagggggcgc 3001 cagttctctc cgcgctcccg gctggctggc ccctgatggt cctagacctc aaggattgct 3061 ttttttctat tcctcttgcg gaacaagatc gcgaagcttt tgcatttacg ctcccctctg 3121 tgaataacca ggcccccgct cgaagattcc aatggaaggt cttgccccaa gggatgacct 3181 gttctcccac tatctgtcag ttgatagtgg gtcaggtact tgagcccttg cgactcaagc 3241 acccatctct gcgcatgttg cattacatgg atgatctttt gctagccgcc tcaagtcatg 3301 acaggttgga agcggcaggg gaggaggtta ttagtacact ggaaagagcc gggttcacca 3361 tttcgcctga taaggtccaa agggagcccg gagtacaata tcttgggtac aagttaggca 3421 gtacgtatgt agcacccgta ggtctggtag cagaacccag gatagccacc ttgtgggatg 3481 ttcaaaagct ggtgggatca cttcagtggc ttcgccctgc attaggaatc ccgccacgac 3541 tgatgggccc cttttatgag cagttgcggg ggtcagaccc taacgaggcg agggaatgga 3601 atctagacat gaaaatggcc tggagagaga ttgtacagct cagcaccact gctgccttgg 3661 aacgatggga ccctgccctg cctctggaag gagcggtcgc tagatgtgaa cagggggcaa 3721 taggggtcct gggacaggga ctgtccacac acccaaggcc atgcttgtgg ttattctcca 3781 cccaacccac caaggcgttt actgcttggt tagaagtgct cacccttctg attactaagc 3841 tacgtgcttc ggcagtgcgg acctttggca aagaggttga tatcctcctg ttgcctgcat 3901 gctttcggga ggaccttccg ctgccggagg ggatcctgct agcccttaag ggatttgcag 3961 gaaaaatcag gagtagtgat acgccatcta tctttgacat tgcgcgtcca ctgcatgttt 4021 ctctgaaagt gagggttacc gaccaccctg tgctaggacc cactgtcttt actgacgcct 4081 cctcaagcac ccataagggg gtggtagtct ggagggaggg cccaaggtgg gagataaaag 4141 aaatagctga tttgggagca agtgtacaac aactggaggc acgcgctgtg gccatggcac 4201 ttctgctgtg gccgacaacg cccacgaatg tagtgactga ctccgcgttt gttgcgaaaa 4261 tgctactcaa gatgggacag gagggagtcc cgtctacagc ggcggctttt attttagagg 4321 atgcgttaag ccaaaggtca gccatggccg ccgttctcca cgtgcggagt cattctgaag 4381 tgccagggtt tttcacggaa ggtaatgacg tggcagatag ccaagccacc tttcaagcgt 4441 atcccttgag agaggctaaa gatcttcata ccgctctcca tattggaccc cgcgcgctat 4501 ctaaagcgtg taatatatct atgcagcagg ctagggaggt tgttcagacc tgcccgcatt 4561 gtaattcagc ccctgcgttg gaggccgggg taaaccctag gggtttggga cccctacaga 4621 tatggcagac agactttacg cttgagccta gaatggcccc ccgttcctgg cttgctgtta 4681 ctgtggatac cgcctcatca gcgatagtcg taactcagca tggccgtgtc acatcggttg 4741 ctgcacaaca tcattgggcc acggctatcg ccgttttggg aagaccaaag gccataaaaa 4801 cagataatgg gtcctgcttc acgtctaaat ccacgcgaga gtggctcgcg agatggggga 4861 tagcacacac caccgggatt ccaggtaatt cccagggtca agctatggta gagcgggcca 4921 accggctcct gaaggataag atccgtgtgc ttgcggaggg ggacggcttt atgaaaagaa 4981 tccccaccag caaacagggg gaactactag ccaaggcaat gtatgccctc aatcactttg 5041 agcgtggtga aaacacaaaa acaccaatac aaaaacactg gagacctacc gttcttacag 5101 aaggaccccc ggttaagata cgaatagaga caggggagtg ggaaaaagga tggaacgtgc 5161 tagtctgggg acgaggttat gccgctgtga aaaacaggga cactgataag gttatttggg 5221 taccttctcg gaaagttaaa ccggacatca cccaaaagga tgaggtgact aagaaagatg 5281 aggcgagccc tctctttgca ggcatttctg actgggcacc ctgggaaggt gagcaagaag 5341 gactctaaga agaagccgcc agcaacaagc aagaaagacc cggagaagac acccttgctg 5401 ccatcgagag gttacttctt ctttcaaatg atacttgtgt gcgtggttat tatttccgtt 5461 gtcccagggg tggggggagt tcatctattg caacaaccag gaaacgtgtg ggtcacctgg 5521 gcaaataaga cgggccgaac agatttttgc cttagtctac agtcagcgac ctcaccattc 5581 cgcacctgct tgataggcat tccacagtat cctctgaaca cctttaaggg atatgtcact 5641 aatgttactg cttgcgataa caacaccgat ttagccagcc aaacagcatg cttgataaag 5701 gctctaaata caaccctccc ttgggacccc caagaattgg atattttagg gtcccagatg 5761 atcaagaacg gaacaacacg tacgtgtgtt acctttggtt cggtgtgcta taaagagaac 5821 aatcgcagta gagtctgtca caattttgat gggaatgtta atgggactgg tggggcggaa 5881 cgagagttgc gtgacttcat agcaaaatgg aaaagtgatg accttcttat aaggccctat 5941 gtcaaccaat catggacgat ggtaagtcca ataaacgtag agagtttttc aataagtcgt 6001 agatattgtg gattcaccag taacgagact cgttactata gaggggacct ttctaattgg 6061 tgtagttcaa aaaggggaga atggtcagcg gggtacagca acgggacaaa atgttccagc 6121 aacacgacgg gttgtggtgg taattgcaca acggaatgga attattatgc atatgggttt 6181 accttcgggg aacagccaga ggtgttgtgg aacaatggga ctgctaaggc actcccacca 6241 ggtattttct tgatttgtgg ggacagggct tggcaaggca tcccgcgtaa tgccttggga 6301 gggccctgtt atctaggaca attgactatg ctctctccta actttaccac ctggataaca 6361 tatgggccga acattacggg tcaccaccgt agcaggcgct cgctgagtcg tctctcgcct 6421 gactgcggtg atgagctaca gctatggagt gtgacagccc ggatatttgc ttctttcttt 6481 gctcctggta tagcagcagc acaggcctta aaggagatcg agcgattggc atgttggtcg 6541 gttaagcaag cgaatttaac atcattaata ttgaatgcga tgctggagga tacaagcagt 6601 atccggcacg cagtgttgca gaatcgagca gccatcgatt tcttactcct ggcgcaggga 6661 cacgggtgtc aagacgtaga agggatgtgc tgcttcaatc tcagcgatca tagtgagtcc 6721 attcataagg cgctccaagc catgaaggaa catacagaga agatacgggt ggaagatgat 6781 cccatagggg attggtttac gcgcacgttt ggtgatctag gaaggtggct cgcgaaaggt 6841 gttaagacgc tactgtttgc cttgcttgtc atagcctgtc tattagctat cattccatgt 6901 gtaatcaagt gctttcagga ttgtctatcg agaacaatga atcagtttat ggatgaacgc 6961 ataagatatc atagaattag ggagcagctg taggttccga acgcgatgtg acgggaggct 7021 gcgagggata tccggaggaa taggagaatg ggccgttcat ttgctgaaag gactgctttt 7081 ggggcttgtg gtaatgtgcc tgccttgcct tttgcaattt gtgtccagta gcatccgaag 7141 gagtattaat aattcaatca gctatcacac ggaatataag aagttgcaaa aggcttgtag 7201 gcagcccaaa aatggggcaa tgtaaagcag tgcatgggta ggggtatgaa acttgcgaat 7261 cgggctgtaa cggggcaagg cttgactgag gggactgcag catgtatagg cgctgggcgg 7321 ggcttcggtt gtacgcggat aggaatcccc tcaggacaat tctgcttgaa atatgatggc 7381 accttcccta ttgtgccctt agactattca agttgcctct gtggattagg actggaggca 7441 gctcggatgg tctgatggcc aaatagagca agctagatag gtaactgcga aatacgcttt 7501 tgcataggga gggggaaatg tagtgttatg caatactctt atgtaacgat gaaacagcaa 7561 tatgccttat aaggaagaaa aaggcactgt acacgtcgat tggtggaagt aaggtggtat 7621 gatcatggta tgatcgtgcc ttattaggaa ggcaacagac gggtcttaca tggattggac 7681 gaactcctta gttccgcatt acagagatat tgtatttaag tgcctagccc gacacaataa 7741 acgccatttt acctcccacc acattggtgt gcacctgggt tgatggccgg accgtcgatt 7801 ccctgacaac tacgagcacc tgcatgaagc ggatggcttc a //