D10652 Rous sarcoma virus LOCUS ALRSRDCG 9317 bp RNA linear VRL 01-FEB-2000 DEFINITION Rous sarcoma virus genome, complete sequence. ACCESSION D10652 VERSION D10652.1 GI:221012 KEYWORDS core proteins; envelope protein; integrase; retroviral protease; reverse transcriptase; src oncogene; tyrosine kinase. SOURCE Rous sarcoma virus ORGANISM Rous sarcoma virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 9317) AUTHORS Kihira,Y. JOURNAL Unpublished REFERENCE 2 (bases 1 to 9317) AUTHORS Kihira,Y. TITLE Direct Submission JOURNAL Submitted (28-FEB-1992) Yasunori Kihira, Oriental Yeast Co., Ltd., Nagahama Inst. for Biochemical Science; 50 Kano-cho, Nagahama, Shiga 526, Japan (Tel:0749-64-2346, Fax:0749-63-7910) COMMENT Submitted (28-Feb-1992) to DDBJ by: Yasunori Kihira Nagahama Institute for Biochemical Science Oriental Yeast Co., Ltd. 50 Kano-cho, Nagahama-shi Shiga 526 Japan Phone: 0749-64-2346 Fax: 0749-63-7910. FEATURES Location/Qualifiers source 1..9317 /organism="Rous sarcoma virus" /mol_type="genomic RNA" /strain="Schmidt-Ruppin D" /db_xref="taxon:11886" LTR 1..21 /note="R region" LTR 22..101 /note="U5 region" gene 372..2471 /gene="gag" CDS 372..2471 /gene="gag" /codon_start=1 /product="gag polyprotein" /protein_id="BAA01499.1" /db_xref="GI:221013" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMILGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEEAATPKTVGTSCYHCGTA VGCNCATATASAPPPPYVGSGLYPSLAGVGEQQGQGDRAEQPREEPGHAGQAPGPALT DWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAE VEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGR GERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPWAD ITQGPSESFVDFANRLIKAVEGSDLPPTARAPVIIDCFRQKSQPDIQQLIRAAPSTLT TPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGLCY TCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDGNQGQRPGRGLSSGPW PGPEQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEED WPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVRGS ILGRDCLQGLGLRLTNL" mat_peptide 372..902 /gene="gag" /product="reading frame p19" mat_peptide 909..1082 /gene="gag" /product="reading frame p10" mat_peptide 1083..1802 /gene="gag" /product="reading frame p27" mat_peptide 1830..2096 /gene="gag" /product="reading frame p12" mat_peptide 2097..2468 /gene="gag" /product="reading frame p15" gene 2489..5173 /gene="pol" mat_peptide 2489..5173 /gene="pol" /product="reverse transcriptase" /note="stop codon taa follows at 5174-5176." gene 5064..6884 /gene="env" mat_peptide 5064..6884 /gene="env" /product="envelope protein" /note="stop codon taa follows at 6885-6887." gene 7267..8847 /gene="src" CDS 7267..8847 /gene="src" /note="transforming gene" /codon_start=1 /product="tyrosine kinase" /protein_id="BAA01500.1" /db_xref="GI:221014" /translation="MGSSKSKPKDPSQRRRSLEPPDSTHHGGFPASQTPNTTAAPDTH RTPSRSFGTVATEPKLFGDFNTSDTVTSPQRAGALAGGVTTFVALYDYESWIETDLSF KKGERLQIVNNTEGNWWLAHSVTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESER LLLNPENPRGTFSVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT QFSSLQQLVTYYSKHADGLCHRLTNVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQG CFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLQHEKLVQLYAVVSEEPI YIVIEYMSKGSLLNFLKGEMGKYLRLPQLVDMAAQIASSMAYVERMNYVHRDLRAANI LVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI LLTELTTKGRVPYPGMGNGEVLDRVEEGYRMPCPPECPESLHDLMCQCWRRDPEERPT FEYLQAQLLPACVLEVAE" LTR 9071..9296 /note="U3 region" LTR 9297..9317 /note="R region" ORIGIN 1 gccatttgac cattcaccac attggtgtgc acctgggttg atggccggac cgttgagtcc 61 ctaacggttg cgaacacctg gatgaagcag aaggcttcat ttggtgaccc cgacgtgata 121 gttagggaat agtggtcggc cacagacggc gtggcgatcc tgtctccatc cgtctcgtct 181 atcgggaggc gagttcgatg accctggtgg agggggctgc ggcttaggga ggcagaagct 241 gagtaccgtc ggagggagct ccagggcccg gagcgactga cccctgccga gaactcagag 301 ggtcgtcgga agacggagag tgagcccgac gaccacccca ggcacgtctt tggtcggcct 361 gcggatcaag catggaagcc gtcattaagg tgatttcgtc cgcgtgtaaa acctattgcg 421 ggaaaacctc tccttctaag aaggaaatag gggccatgtt gtccctgtta caaaaggaag 481 ggttgcttat gtctccctca gatttatatt ctccggggtc ctgggatccc atcactgcgg 541 cgctctccca gcgggcaatg atacttggaa aatcgggaga gttaaaaacc tggggattgg 601 ttttgggggc attgaaggcg gctcgagagg aacaggttac atctgagcaa gcaaagtttt 661 ggttgggatt agggggaggg agggtctctc ccccaggtcc ggagtgcatc gagaaaccag 721 ctacggagcg gcgaatcgac aaaggggagg aagtgggcga aacaactgtg cagcgagatg 781 cgaagatggc gccggaggaa gcggccacac ctaaaaccgt tggcacatcc tgctatcatt 841 gcggaacagc tgttggctgc aattgcgcca ccgccacagc ctcggcccct cctccccctt 901 atgtggggag tggtttgtat ccttccctgg cgggggtggg agagcagcag ggccagggag 961 atagggcgga gcagccaagg gaggagccag ggcacgcggg tcaggcccct gggccggccc 1021 tgactgactg ggcaagggta agagaggagc ttgcgagtac aggtccgccc gtggtggcca 1081 tgcccgtagt gattaagaca gagggacccg cctggacccc tctggagcca aaattgatca 1141 caagactggc tgatacggtc aggaccaagg gcttacgatc cccgatcact atggcagaag 1201 tggaagcgct catgtcctcc ccgttgctgc cgcatgacgt cacgaatcta atgagagtta 1261 ttttaggacc tgccccatat gccttatgga tggacgcttg gggagtccaa ctccagacgg 1321 ttatagcggc agccactcgc gacccccgac acccagcgaa cggtcaaggg cggggggaac 1381 ggactaactt ggatcgatta aagggcttag ctgatgggat ggtgggcaac ccacagggtc 1441 aggccgcatt attaagaccg ggggaattgg ttgctattac ggcgtcggct ctccaggcgt 1501 ttagagaagt tgcccggctg gcggaacctg caggtccatg ggcggacatc acgcagggac 1561 catctgagtc ctttgttgat tttgccaatc ggcttataaa ggcggttgag gggtcagatc 1621 tcccgcctac cgcgcgggct ccggtgatta ttgactgctt taggcagaag tcgcagccag 1681 acattcagca gcttatacgg gcagcaccct ccacactgac caccccagga gagataatca 1741 aatatgtgct ggataggcag aaaactgccc ctcttacgga tcaaggcata gccgcggcca 1801 tgtcgtctgc tatccagccc ttagttatgg cagtagtcaa tagagagagg gatggacaaa 1861 ctgggtcggg tggtcgtgcc cgagggctct gctacacttg tggatccccg ggacattatc 1921 aggcacagtg cccgaaaaaa cgaaaatcag gaaacagccg tgagcgatgt cagctgtgtg 1981 acgggatggg acacaacgct aaacagtgta ggaagcggga tggcaaccag ggccaacgcc 2041 caggaagagg tctctcttcg gggccgtggc ccggccctga gcagcctgcc gtctcgttag 2101 cgatgacaat ggaacataaa gatcgcccct tggttagggt cattctgact aacactggga 2161 gtcatccagt caaacagcgt tcggtgtata tcaccgcgct gttggactcc ggagcagaca 2221 tcactattat ttcggaggag gattggccta ctgattggcc ggtggtggac accgcgaacc 2281 cacagatcca tggcatagga gggggaattc ccatgcgaaa atctcgtgac atgatagagt 2341 tgggggttat taaccgagac gggtccttgg agcgacccct gctcctcttc cccgcagtgg 2401 ctatggttag agggagtatc ctaggaagag attgtctgca gggcctaggg ctccgcttga 2461 caaatttata gggagggcca ctgttcttac tgttgcgcta catctggcta ttccgctcaa 2521 atggaagcca gaccacacgc ctgtgtggat tgaccagtgg ccccttcctg agggtaaact 2581 tgtagcgcta acgcaattag tggaaaaaga attgcagcta ggacatatag aaccttcact 2641 tagttgttgg aacacacctg tctttgtgat ccggaaggct tccgggtctt atcgcttatt 2701 gcatgacttg cgcgctgtta acgctaagct tgttcctttt ggggccgtcc aacagggggc 2761 gccagttctc tccgcgctcc cgcgtggctg gcccctgatg gtcctagacc tcaaggattg 2821 cttcttctct attcctcttg cggaacaaga tcgcgaagct tttgcattta cgctcccctc 2881 tgtgaataac caggcccccg ctcgaagatt ccaatggaag gtcttgcccc aaggaatgac 2941 ctgttctccc actatctgtc agttggtagt gggtcaggta cttgagccct tgcgactcaa 3001 gcacccatct ctgcgcatgt tgcattatat ggatgatctt ttgctagccg cctcaagtca 3061 tgatgggttg gaagaggcag gggaggaggt tatcagtaca ttggaaagag ccgggttcac 3121 catttcgcct gataaggtcc agagggagcc cggagtacaa tatcttgggt acaagttagg 3181 cagtacgtat gtagcacccg taggcctggt agcagaaccc aggatagcca ccttgtggga 3241 tgttcaaaag ctggtagggt cacttcagtg gcttcgccca gcgttaggaa tcccgccacg 3301 actgatgggc cccttctatg agcagttacg agggtcagat cctaacgagg cgagggaatg 3361 gaatctagac atgaaaatgg cctggaggga gatcgtacag cttagcacca ctgctgcctt 3421 ggaacgatgg gaccctgccc tgcctttgga gggagcggtc gctaggtgtg aacagggggc 3481 aataggggtc ctgggacagg gactgtccac acacccaagg ccatgtttgt ggctattttc 3541 cacccaaccc accaaggcgt ttactgcctg gatagaagta ctcacccttt tgattactaa 3601 gctacgcgct tcggcagtgc gaacctttgg caaggaggtt gatatcctcc tgttgcctgc 3661 atgctttcgg gaggaccttc cgctcccgga ggggatcctg ttagccctta gggggtttgc 3721 aggaaaaatc aggagtagtg acacgccatc tatttttgac attgcgcgtc cactgcatgt 3781 ttctctgaaa gtgagggtca ccgaccaccc tgtaccggga cccactgcct ttaccgacgc 3841 ctcctcaagc acccataaag gggtggtagt ctggagggag ggcccaaggt gggagataaa 3901 agaaatagct gatctggggg caagtgtaca acaactggaa gcacgcgctg tggccatggc 3961 acttttgctg tggccgacaa cgcccactaa tgtagtgact gactccgcgt ttgttgcgaa 4021 aatgttactc aagatgggtc aggagggagt cccatctaca gcggcggctt ttattttaga 4081 ggatgcgtta agccaaaggt cagccatggc cgccattctc catgtgcgga gtcattctga 4141 agtgccaggg tttttcacag aaggaaatga cgtggcagac agccaagcca cctttcaagc 4201 gtatcccttg agagaggcta aagatcttca tactgctctc catattggac cccgcgcgct 4261 atccaaagcg tgtaatatat ctatgcagca ggctagggag gttgttcaga cctgcccgca 4321 ttgtaattca gcccctgcgt tggaggccgg agtaaaccct aggggtttgg gacccctaca 4381 gatatggcag acagacttta cgcttgagcc tagaatggcc ccccgttcct ggctcgctgt 4441 tactgtggat accgcctcat cagcgatagt cgtaactcag catggccgtg tcacatcggt 4501 tgctgcacaa catcattggg ccacggctat cgccgttttg ggaagaccaa aggccataaa 4561 aacagataat gggtcctgtt tcacgtctaa atccacgcga gagtggctcg cgagatgggg 4621 gatagcacac accaccggga ttccgggtaa ttcccagggt caagctatgg tagagcgggc 4681 caaccggctc ctgaaagata agatccgtgt gcttgcggag ggggacggct ttatgaaaag 4741 aatccccgcc agcaagcagg gggaactact agccaaggca atgtatgccc tcaatcactt 4801 tgagcgtggt gaaaacacaa aaacaccgat tcaaaaacac tggagaccta ccgttcttac 4861 agaaggaccc ccggttaaaa tacgaataga gacaggggag tgggaaaaag gatggaatgt 4921 gctggtctgg ggacgaggtt atgcagctgt gaaaaacagg gacactgata aggttatttg 4981 ggtaccctct cggaaagtta aaccggatgt cacccaaaag gatgaggtga ctaagaaaga 5041 tgaggcgagc cctctttttg caggcatttc tgactggata ccctgggaag acgagcaaga 5101 aggactccaa ggagaaaccg ctagcaacaa gcaagaaaga cccggagaag acacccttgc 5161 agccaacgag agttaattat attctcatta ttggtgtcct ggtcttgtgt gaggttacgg 5221 gggtaagagc tgatgtccac ttactcgagc agccagggaa cctttggatt acatgggcca 5281 accgtacagg ccaaacggat ttttgcctct ctacacagtc agccacctcc ccttttcaaa 5341 catgtttggt aggtatcccg tcccctattt ccgaaggtga ttttaaggga tacgtctctg 5401 ataattgcac caccttggga actgaccggt tagtctcgtc agccagcatt accggcggtc 5461 ctgacaacag caccaccctc acttatcgaa aggtttcatg cttgctgtta aagctgaacg 5521 tctctatgtg ggatgagcca cctgaactgc agctgttagg ctcccagtct ctccctaata 5581 tcgctaatat tactcagatc cctggtgtgg caggaggatg cataggcttc accccatacg 5641 gcagtccggc tggtgtttac gggtggggcc gggaagaggt gacacacatc ctcttaacca 5701 acccccctga taatcctttc tttaaccgtg cttctaactc cacggaaccg tttacggtgg 5761 tgacagcgga taggcacaat cttttcatgg ggagcgaata ctgtggtgcg tatggatata 5821 gattttggga aatgtacaat tgctcacaaa ttcgcaatta ttctatctgt gaggacgtat 5881 ggggcccagg cctccctgaa aattggtgcg cacgcacggg gggtacatgg gttaataagt 5941 caaaggaaat caatgagact gagccgatca gctttacggt aaattgtaca ggcagtaatt 6001 taggcaatgt tagcggatgc tgtggagaag caattacgat tctcccccca ggagcatggg 6061 tcgacagcac acaaggtagt ttcactaaac ccaaagcgct accacccgga attttcctca 6121 tttgtgggga tcgcgcatgg caaggaattc ccagtcgtcc ggtagggggc ccctgctatt 6181 taggcaagct taccatgtta gcacctaacc atacagatat tctcaagata cttgccaatt 6241 catcacggac aaatgtaaga cgcaaacgaa gcgtctcgca cttggatgat acatgctcag 6301 atgaagtgca gctttggggt cctacagcaa gaatctttgc atctatctta gccccggggg 6361 tagcagctgc gcaagcctta agagaaattg agagactagc ctgttggtcc gttaaacagg 6421 ctaacttgac aacatcactc ctcggggact tattgaatga tgtcacgagt attcgacacg 6481 cggtcctgca gaaccgagcg gctattgact tcttgctcct agctcacggc catggctgtg 6541 aggacgttgc cggaatgtgt tgtttcaatc tgagtaatca cagtgagtct atacagaaga 6601 agttccagct aatgaaggaa catgtcaata agatcggcgt ggacagcgac ccaattggaa 6661 gttggctgcg aggactattc gggggaatag gagaatgggc cgttcatttg ctgaaaggac 6721 tgcttttggg gcttgtagtt attttgttgc tagtagtgtg cctgccttgc cttttgcaaa 6781 tcgtatgcgg tagcatcaga aagatgatta ataactccat cagctaccac acggaatata 6841 agaagctgca aaaggcctgt gggcaacctg aaagcagaat agtataaggc agtacatggg 6901 tggtggtata gcgcttgcga gtcgggttgt aacggggcat ggcttaacta aggggactat 6961 ggcatgtata ggcgcaaagc ggggtttcgg ttgtacgcga ttaggagtcc ccttaggata 7021 tagtagacac gcttttgcat atgttacata acttccctgt tttgccctta gactattcaa 7081 gttgcctctg tggattaggg ctggagacag ctcggatggt ctgacggcca gataaggcag 7141 gaaagacagc tattggtaat tgtgaaatac gcttttgtct gtgtgctgca ggagctgagc 7201 tgactctgct ggtggcctca cgtaccactg tggccaggca gtagctggga cgtgcagccg 7261 accaccatgg ggagtagcaa gagcaagcct aaggacccca gccagcgccg gcgcagcctg 7321 gagccacccg acagcaccca ccacggggga ttcccagcct cgcagacccc caacacgaca 7381 gcagcccccg acacgcaccg cacccccagc cgctccttcg ggaccgtggc caccgagccc 7441 aagctcttcg gggacttcaa cacttctgac accgttacgt caccgcagcg tgccggggca 7501 ctggctggcg gcgtcaccac tttcgtggct ctctacgact acgagtcctg gattgaaacg 7561 gacttgtcat tcaagaaagg agaacgcctg cagattgtca acaacacgga aggcaactgg 7621 tggctggctc attccgtgac tacaggacag acgggctaca tccccagtaa ctatgtcgcg 7681 ccctcagact ccatccaggc tgaagagtgg tactttggga agatcactcg tcgggagtcc 7741 gagcggctgc tgctcaaccc cgaaaacccc cggggaacct tctcggtccg ggagagcgag 7801 acgacaaaag gtgcctattg cctctccgtt tctgactttg acaacgccaa ggggctcaat 7861 gtgaagcact acaagatccg caagctggac agcggcggct tctacatcac ctcacgcaca 7921 cagttcagca gcctgcagca gctggtgacc tactactcca aacatgctga tggcttgtgc 7981 caccgcctga ccaacgtctg ccccacgtcc aagccccaga cccagggact cgccaaggac 8041 gcgtgggaaa tcccccggga gtcgctgcgg ctggaggtga agctggggca gggctgcttt 8101 ggagaggtct ggatggggac ctggaacggc accaccagag tggccataaa gactctgaag 8161 cccggcacca tgtccccgga ggccttcctg caggaagccc aagtgatgaa gaagctccag 8221 catgagaagc tggttcaact gtacgcagtc gtgtcggaag agcccatcta catcgtcatt 8281 gagtacatga gcaaggggag cctcctgaat ttcctgaagg gagagatggg caagtacctg 8341 cggctgccac agctcgttga tatggctgct cagattgcat ccagcatggc ctatgtggag 8401 aggatgaact acgtgcaccg agacctgcgg gcggccaaca tcctggtggg ggagaacctg 8461 gtgtgcaagg tggctgactt tgggctggca cgcctcatcg aggacaacga gtacacagca 8521 cggcaaggtg ccaagttccc catcaagtgg acagcccccg aggcagccct ctatggccgg 8581 ttcaccatca agtcggatgt ctggtccttc ggcatcctgc tgactgagct gaccaccaag 8641 ggccgggtgc catacccagg gatgggcaac ggggaggtgc tggaccgggt ggaggagggc 8701 taccgcatgc cctgcccgcc cgagtgcccc gagtcgctgc atgaccttat gtgccagtgc 8761 tggcggaggg accctgagga gcggcccact tttgagtacc tgcaggccca gctgctccct 8821 gcttgtgtgt tggaggtcgc tgagtagtgc gcgagcaaaa tttaagctac aacaaggcaa 8881 ggcttggccg acaattgcat gaagaatctg cttagggtta ggcgttttgc gctgcttcgc 8941 gatgtacggg ccagatatac gcgtatctga ggggactagg gtgtgtttag gcgaaaagcg 9001 gggcttcggt tgtacggggt taggagtccc ctcaggatat agtagtttcg cttttgcata 9061 gggaggggga aatgtagtct tatgcaatac tcttgcaaca tgcttatgta acgatgagtt 9121 agcaacatgc cttacaagga gagaaaaagc accgtgcatg acgattggtg gaagtaaggt 9181 ggtacgatcg tgccttatta ggaaggcaac agacgggtct gacatggatt ggacgaacca 9241 ctgaattccg cattgcagag atattgtatt taagtgccta gctcgataca ataaacgcca 9301 tttgaccatt caccaca //