AY027920 Avian leukosis virus ADOL-7501 LOCUS AY027920 7612 bp DNA linear VRL 06-JUN-2001 DEFINITION Avian leukosis virus ADOL-7501, complete proviral sequence. ACCESSION AY027920 VERSION AY027920.1 GI:14324120 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7612) AUTHORS Zavala,G., Jackwood,M.A., Hafner,S., Glisson,J.R. and Hilt,D.A. TITLE Molecular and biological characterization of an oncogenic subgroup J avian leukosis-like virus (ALV-J) JOURNAL Unpublished REFERENCE 2 (bases 1 to 7612) AUTHORS Zavala,G., Jackwood,M.W. and Hilt,D.A. TITLE Direct Submission JOURNAL Submitted (22-FEB-2001) Avian Medicine, The University of Georgia, 953 College Station Road, Athens, GA 30602, USA FEATURES Location/Qualifiers source 1..7612 /organism="Avian leukosis virus" /proviral /mol_type="genomic DNA" /strain="ADOL-7501" /db_xref="taxon:11864" /note="obtained from virus infected secondary chicken embryo fibroblasts subgroup: J" LTR 1..325 /note="5'LTR" repeat_region 1..224 /note="U3" /rpt_type=direct 5'UTR 225..603 repeat_region 225..245 /note="R" /rpt_type=direct repeat_region 246..325 /note="U5" /rpt_type=direct gene 604..6990 /gene="env" CDS join(604..621,5302..6990) /gene="env" /note="encodes envelope surface (SU = gp85) and transmembrane (TM) proteins" /codon_start=1 /product="envelope proteins" /protein_id="AAK58476.1" /db_xref="GI:14324122" /translation="MEAVIKAFLTGHPGKVSKKDSKKKPPATSKKDPEKTPLLPSRGY FFFQMTLVCVVIISVVPGVGGVHLLQQPGNVWVTWANKTGQTDFCLSLQSATSPFRTC LVGLPSYQLEEFREYTVNYTECRNDTDMATQTACLIQSLNTTLPWDPQELDILGSRMI KNGTTRTCVTFGSVCYKNNGSTTCHIFDGNFNGTGGAEAELRDFIEIWKGNDLLIRPY VNQSWTMVSPINTESFSISSRYCGFTSNETRYYSMNTSDWCDTKGGTWSAADRNGTKC FSNTTGCGGNCTAEWNYYAYGFTFGKQPEVLWNNGTAKALPPGIFLICGDRAWQGIPR NALGGPCYLGQLTMLSPNLTTWMTYGPNITGHHRSRRSASQLSSDCSDDVQLWSATAR IFASFFAPGVAAAQALREIERLACWSVKQANLTSLILNAMLEDTNSIRHGVLQNRAAI DFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTEKIRVEDDPIGDWFTRTF GSLGGWLAKGVKTLLFALLVIVCLLAIIPCIIKCFQDCLSRTMYQFMDERIRYHRIRE QL" mat_peptide 5476..6396 /gene="env" /product="gp85 (SU) domain of env" mat_peptide 6397..6987 /gene="env" /product="gp37 (TM) domain of env" CDS 604..2709 /gene="env" /note="encodes viral structural (internal) proteins: matrix protein (MA p19); p2; p10; capsid protein (CA p27); nucleocapsid protein (NC p12)" /codon_start=1 /product="gag proteins" /protein_id="AAK58475.1" /db_xref="GI:14324121" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQEEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKVAREEQATSEQAKFWLGLGG GGVSPPGPECIEKPATERRTDKGEEAREATAQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWSIQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVANRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRKRDNNQGQRPGRGLSSG PWPGPEPPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPADWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" mat_peptide 604..1068 /gene="env" /product="matrix protein" /note="MA p19" mat_peptide 1069..1134 /gene="env" /product="p2" mat_peptide 1135..1320 /gene="env" /product="p10" mat_peptide 1321..2037 /gene="env" /product="capsid protein" /note="CA p27" mat_peptide 2068..2334 /gene="env" /product="nucleocapsid protein" /note="NC p12" mat_peptide 2335..2706 /gene="env" /product="protease" /note="PR p15" gene <2727..5348 /gene="pol" CDS <2727..5348 /gene="pol" /note="start codon unknown" /codon_start=1 /product="pol proteins" /protein_id="AAK58477.1" /db_xref="GI:14324123" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENARTPIQKHWRPTVLTEGPPVKI RIETGEWERGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASHL FAGISDWAPWKGEQEGL" mat_peptide 2727..4442 /gene="pol" /product="reverse transcriptase beta subunit" /note="RT p68" mat_peptide 4443..5300 /gene="pol" /product="integrase" /note="IN p32" 3'UTR 6991..7513 /note="3'UTR" misc_feature 7037..7129 /note="DR1" misc_feature 7130..7276 /note="E or XSR element" LTR 7288..7612 /note="3'LTR" repeat_region 7288..7513 /note="U3" /rpt_type=direct repeat_region 7514..7534 /note="R" /rpt_type=direct repeat_region 7535..7612 /note="U5" ORIGIN 1 tgtagtgtta tacaatactc ttatgtaacg atgaaacagc aatatgcctt ataaggagaa 61 agaaggcact atgcacggcg attggtggaa gtaagatggg atgatcgtgg tatgatcgtg 121 ccttattagg aaggcaacag acgggtctta catggattgg acgaactcct tagttccgca 181 ttacagagat attgtattta agtgcctggc ttgacacaat aaacgccatt ttacctccca 241 ccacattggt gtgcacctgg gttgatggcc ggaccgtcga ttccctgacg actacgagca 301 cctgaatgaa ccagaaggct tcatttggtg accccgacgt gatcgttagg gaatagtggt 361 cggccacaga cggcgtggcg atcctgtcct catccgtctc gcttattcgg ggagcggacg 421 atgaccctag tagagggggc tgcggcttag gagggcagaa gctgagtggc gtcggaggaa 481 gctctactgc agggagccag catatcctac cgagcactca gagggtcgtt ggaagacggg 541 aaggaagccc gacgactgag cggtccgccc cagacgtgat tctggtcgcc ctgtggatcc 601 agtatggaag ccgtcataaa ggtgatttcg tccgcgtgta aaacctattg cgggaaaact 661 tctccttcta agaaggaaat cggggccatg ttgtccctct tacaagagga agggttgctt 721 atgtctccct cagacttata ctccccgggg tcctgggatc ccatcactgc ggcgctctcc 781 cagcgggcaa tggtacttgg aaaatcgggg gagttaaaaa cctgggggtt ggttttgggg 841 gcattgaagg tggctcgaga ggaacaggct acatctgagc aagcgaagtt ttggttgggg 901 ctagggggag ggggggtctc tcccccaggt ccggagtgta tcgaaaaacc agcaacggag 961 cggcggaccg acaaagggga ggaagcgagg gaggcaactg cgcagcgaga tgcgaagatg 1021 gcgccggagg aaacggccac acctaaaact gttggcacat cctgctatca ttgcggaaca 1081 gctattggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt ggggagtggt 1141 ttgtatcctt ccctggcggg ggtgggagag cagcagggcc aagggggtga cacacctcgg 1201 ggggcggaac agccaagggc ggagccaggg cacgcgggtc aggcccctgg gccggccctg 1261 actgattggg caaggatcag ggaggagctt gcgagtacag gtccgcccgt ggtggccatg 1321 cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa attgatcaca 1381 agactggctg atacggtcag gaccaagggc ttacgatccc cgatcactat ggcagaagtg 1441 gaagcgctta tgtcctcccc gctgctgccg catgacgtca cgaatctaat gagagttatt 1501 ttaggacctg ccccatatgc cttgtggatg gacgcttgga gtatccaact acagacggtt 1561 atagcggcag ccactcgcga cccccgacac ccagcgaatg gtcaggggcg gggggagcgg 1621 actaatttgg atcgtttaaa gggtttggcg gatggaatgg ccggcaatcc agagggtcag 1681 gctgcattat taagaccggg ggaactggtt gctattacag cgtcggctct ccaggcgttt 1741 agagaggtcg ctcggttggc ggaacccaca gacccgtggg cggaaattac gcagggacca 1801 tctgagtcct ttgtggattt tgccaatcgg cttataaagg cggttgaagg gtcagatctc 1861 ccgccttccg cgcgggctcc ggtgatcatt gactgcttta ggcagaagtc acagccagat 1921 atccagcagc ttatacgggc agcaccctcc acgctgacca ccccaggaga aataatcaaa 1981 tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc cgcggccatg 2041 tcgtctgcta tccagccctt agttatggca gtggccaata gagagaggga tggacaaact 2101 gggtcgggtg gtcgtgcccg agggctctgc tacacttgtg gatccccggg acattatcag 2161 gcgcagtgcc cgaaaaaacg aaaatcagga aacagccgtg agcgatgtca gttgtgtgac 2221 gggatgggac acaacgctaa acagtgtagg aagcgggata acaaccaggg ccaacgccca 2281 ggaagaggtc tctcttcggg gccgtggccc ggccctgagc cgcctgctgt ctcgttagcg 2341 atgacaatgg aacataaaga tcgccccttg gttagggtca ttctgactaa cactgggagt 2401 catccggtca aacagcgttc ggtgtatatc accgcgctgt tggactccgg agcggacatc 2461 actattattt cggaggagga ctggcctgct gattggccgg tggtggacac cgcgaacccg 2521 cagatccatg gcataggagg gggaattccc atgcgaaaat ctcgtgacat gatagagttg 2581 ggggttatta accgagacgg gtctttggag cgacccctgc tcctcttccc cgcagtagct 2641 atggttagag gaagtatcct ggggagagat tgtttgcagg gcctagggct ccgcctgaca 2701 aatttatagg gagggccact gttcttactg ttgcgctaca tctggctatt ccgctcaaat 2761 ggaagccaga ccacacgccc gtgtggattg accagtggcc ccttcctgag ggtaaacttg 2821 tagcgctaac gcaattagtg gaaaaagaat tacagttagg acatatagaa ccttcactta 2881 gttgttggaa cacacctgtc tttgtgatcc ggaaggcttc tgggtcttat cgcttattgc 2941 atgacttgcg cgctgttaac gccaagcttg ttccttttgg ggccgtccaa cagggggcac 3001 cagttctctc cgcgctcccg cgtggctggc ccctgatggt cctagacctc aaggattgct 3061 tcttttctat tcctcttgcg gaacaagatc gcgaagcttt tgcatttacg ctcccctctg 3121 tgaataacca ggcccccgct cgaagattcc aatggaaggt cttgccccaa gggatgacct 3181 gttctcccac tatctgtcag ttggtagtgg gtcaggtact tgagcccttg cgactcaagc 3241 acccatctct gtgcatgttg cattatatgg atgatctttt gctagccgcc tcaagtcatg 3301 atgggttgga agcggcaggg gaggaggtta tcagtacatt ggaaagagcc gggttcacca 3361 tttcgcctga taagatccag agggagcccg gagtacaata tcttgggtac aagttaggca 3421 gtacgtatgt agcacccgta ggcctggtag cagaacccag gatagccacc ttgtgggatg 3481 ttcaaaagct ggtggggtca cttcagtggc ttcgcccagc gttaggaatc ccgccacgac 3541 tgatgggccc cttttatgag cagttacgag ggtcagatcc taacgaggcg agggaatgga 3601 atctagacat gaaaatggcc tggagagaga tcgtacagct tagcaccact gctgccttgg 3661 aacgatggga ccctgccctg cctctggaag gagcggtcgc tagatgtgaa cagggggcaa 3721 taggggtcct gggacaggga ctgtccacac acccaaggcc atgtttgtgg ttattctcca 3781 cccaacccac caaggcgttt actgcttggt tagaagtgct cacccttctg attactaagc 3841 tacgtgcatc ggcagtgcgg acctttggca aagaggttga tatcctcctg ctgcctgcat 3901 gctttcggga ggaccttccg ctgccggagg ggatcctgct agcccttaag gggtttgcag 3961 gaaaaatcag gagtagtgac acgccatcta tctttgacat tgcgcgtcca ctgcatgttt 4021 ctctgaaagt gagggttacc gaccaccctg tgccgggacc cactgtcttt accgacgcct 4081 cctcaagcac ccataagggg gtggtagtct ggagggaggg cccaaggtgg gagataaaag 4141 aaatagctga tttgggagca agtgtacaac aactggaagc acgcgctgtg gccatggcac 4201 tcctgctgtg gccgacaacg cccacgaatg tagtgactga ctccgcgttt gttgcgaaaa 4261 tgttactcaa gatgggacag gagggagtcc cgtctacagc ggcggctttt attttagagg 4321 atgcgttaag ccaaaggtca gctatggccg ctgttctcca cgtgcggagt cattcagaag 4381 tgccagggtt tttcacagaa ggaaatgacg tggcagacag ccaagccacc tttcaagcgt 4441 atcccttgag agaggctaaa gatcttcata ccgctctcca tattggaccc cgcgcgctat 4501 ctaaagcgtg taatatatct atgcaacagg ctagggaggt tgttcagacc tgcccgcatt 4561 gtaattcagc ccctgcgttg gaggccgggg taaaccctag gggtttggga cccctacaga 4621 tatggcagac agactttacg cttgagccta gaatggcccc ccgttcctgg cttgctgtta 4681 ctgtggatac cgcctcatca gcgatagtcg taactcagca tggccgtgtc acatcggttg 4741 ctgcacaaca tcattgggcc acggctatcg ccgttttggg aagaccaaag gccataaaaa 4801 cagataacgg gtcctgcttc acgtctaaat ccacgcggga gtggctcgcg aggtggggga 4861 tagcacacac caccgggatt ccgggtaatt cccagggtca agctatggta gagcgggcca 4921 accggctcct gaaggataag atccgtgtgc ttgcggaagg ggacggcttt atgaaaagaa 4981 tccccaccag caaacagggg gaactactag ccaaggcaat gtatgccctc aatcactttg 5041 agcgtggtga aaacgcaaga acaccgatac aaaaacactg gagacctacc gttcttacag 5101 aagggccccc ggttaaaata cgaatagaga caggggagtg ggaaagagga tggaatgtgc 5161 tagtctgggg acgaggttat gccgctgtga aaaacaggga cactgataag gttatttggg 5221 tgccctctcg gaaagtcaaa ccggacatca cccaaaagga tgaggtgact aagaaagatg 5281 aggcgagcca tctctttgca ggcatttctg actgggcacc ctggaaaggt gagcaagaag 5341 gactctaaga agaaaccgcc agcaacaagc aagaaagacc cggagaagac acccttgctg 5401 ccatcgagag gttacttctt ctttcaaatg acacttgtgt gcgtggttat tatttccgtt 5461 gtcccagggg tggggggagt tcatctgttg caacaaccag gaaacgtgtg ggtcacctgg 5521 gcaaataaga cgggccaaac agatttttgc cttagtctac agtcagctac ctctcccttc 5581 cgcacctgtt tggtgggttt gccgagttac caattggagg agtttagaga atatacggtc 5641 aactacactg aatgtagaaa tgatacagac atggctacac agacagcgtg tctgattcaa 5701 tcattaaata caaccctccc ttgggacccc caagaattgg atattttagg atcccggatg 5761 atcaagaacg gaacaacacg tacatgtgtt acctttggtt cggtgtgcta taaaaataat 5821 ggcagtacaa cctgtcacat ttttgatggg aattttaatg ggactggtgg ggcagaagca 5881 gaattgcgtg acttcataga aatatggaaa ggtaatgacc ttcttataag gccctatgtc 5941 aaccaatcat ggacgatggt aagtccaata aacacagaga gtttttcaat aagtagtaga 6001 tattgtggat tcaccagcaa cgagactcgt tattatagca tgaacacttc cgattggtgt 6061 gatacaaaag ggggaacatg gtcagcggca gaccgtaatg ggacaaaatg tttcagcaac 6121 acgacaggtt gtggtggtaa ttgcacggcg gaatggaatt attatgcata tgggtttacc 6181 ttcgggaaac agccagaggt gttgtggaac aatgggactg ctaaggcact cccaccaggt 6241 attttcttga tttgtgggga cagggcttgg caaggtatcc cgcgtaatgc cttgggaggg 6301 ccctgttatc taggacaatt aactatgctc tctcctaact tgaccacctg gatgacgtat 6361 gggccgaaca ttacgggtca ccatcgcagc aggcgttcgg cgagtcagct ctcgtctgac 6421 tgcagtgacg atgtgcagct atggagtgcg acagcccgga tatttgcttc tttctttgct 6481 cctggtgtag ccgcggcaca ggccttaagg gagattgaac gcttggcatg ttggtcggtt 6541 aagcaagcaa atttaacatc attaatattg aatgcgatgc tggaagatac gaacagcatc 6601 cggcacgggg tattgcagaa tcgagcagcc atcgatttct tactcctggc gcagggacac 6661 gggtgtcaag acgtggaagg gatgtgttgc ttcaatctca gcgatcacag tgagtccatt 6721 cacaaggcgc tccaagccat gaaggaacat acagagaaga tacgggtgga agatgatccc 6781 ataggggatt ggtttacgcg cacgtttggt agtcttggag ggtggctcgc gaaaggtgtt 6841 aagacgctac tgtttgcatt gcttgtcata gtctgtttat tagctatcat tccatgtata 6901 atcaagtgct tccaggattg tctatcgaga acaatgtatc agtttatgga tgaacgcata 6961 agatatcata gaattaggga gcagctgtag gttccgaacg tggagctggt aggggtatga 7021 aacttgcgaa tcgggctgtg acggggcaag gcttgactga ggggaccata ctatgtatag 7081 gcgctgggcg gggcttcggt tgtacgcgga taggaatccc ctcaggacaa ttctgcttga 7141 aatatgatga caccttccat gttttgccct tagactattc aagttgcctc tgtggattag 7201 gactggaggc agctcggatg gtctgatggc caaatagagc aagctagata gataactgcg 7261 aaatacgctt ttgcataggg agggggaaat gtagtgttat acaatactct tatgtaacga 7321 tgaaacagca atatgcctta taaggagaaa gaaggcacta tgcacggcga ttggtggaag 7381 taagatggga tgatcgtggt atgatcgtgc cttattagga aggcaacaga cgggtcttac 7441 atggattgga cgaactcctt agttccgcat tacagagata ttgtatttaa gtgcctggct 7501 tgacacaata aacgccattt tacctcccac cacattggtg tgcacctggg ttgatggccg 7561 gaccgtcgat tccctgacaa ctacgagcac ctgcatgagc gagaaggctt ca //