AY013304. Avian leukosis virus strain ev-3 LOCUS AY013304 5842 bp DNA linear VRL 02-APR-2001 DEFINITION Avian leukosis virus strain ev-3, complete genome. ACCESSION AY013304 VERSION AY013304.1 GI:13508438 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 5842) AUTHORS Johnson,J.A. and Heneine,W. TITLE Characterization of endogenous avian leukosis viruses in chicken embryonic fibroblast substrates used in production of measles and mumps vaccines JOURNAL J. Virol. 75 (8), 3605-3612 (2001) MEDLINE 21165271 PUBMED 11264350 REFERENCE 2 (bases 1 to 5842) AUTHORS Johnson,J.A. and Heneine,W. TITLE Direct Submission JOURNAL Submitted (08-NOV-2000) HIV and Retrovirology Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd., Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..5842 /organism="Avian leukosis virus" /proviral /mol_type="genomic DNA" /strain="Endogenous avian leukosis virus 3; ev-3" /specific_host="Gallus gallus" /db_xref="taxon:11864" LTR 1..274 /note="5' LTR" CDS join(554..571,3576..5402) /codon_start=1 /product="Pr57 env polyprotein precursor" /protein_id="AAK13203.1" /db_xref="GI:13508440" /translation="MEAVIKAFLTGYPGETSKKDSKEKPLATSKKDPEKTPLLPTRVN YIIGVLVLCEVTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSATSPFQTCLIGI PSPISEGDFKGYVSDNCTTLGTDRLVSSASITGGPDNSTTLTYRKVSCLLLKLNVSMW DEPPELQLLGSQSLPNITNITQISGVTGGCVGFTPHSNPSGVYGWGRRQVTHNFLIAP WVNPFFNSASNSTEPFTVVTADRHNLFMGSEYCGAYGYRFWEIYNCSHRFDNFDIYTC GDVQTVKSPEKQCVGGGGIWVNQSKEINETEPFSFTANCTASNLGNVSGCCGKTTTIL PSGAWIDSTQGSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPNHTD ILKVLANSSRTGIRRKRNTSHLDDTCSDEVQLWGPTARIFASILAPGVAAAQALREIE RLACWSVKQANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCCF NLSDHSESIQKKFQLMKEHVNKIGVDSDPIGSWLRGLFEGIGEWAVHLLKGLLLGLVV ILLLVVCLPCLLQIVSSSIRKMINNSISYHTEYKKLQKACRQPENGAV" mat_peptide 3744..4721 /product="gp85 receptor-binding envelope protein" mat_peptide 4722..5399 /product="gp37 transmembrane envelope protein" CDS 554..3688 /note="has a 1692 bp deletion relative to similar product encoded by GenBank Accession Number AY013303; positions 2311 and 2329 border the deletion" /codon_start=1 /product="Pr112 gag-pol polyprotein precursor" /protein_id="AAK13202.1" /db_xref="GI:13508439" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGLAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG PWPVSEQPAVSLAMTMEHKDVYINIKGPTVFTDASSSTHKGVVVWREGPRWEIKEIAD LGASVQQLEARAVAMALLLWPTAPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDA LSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQATFQAYPLREAKDLHTALHIGPRAL SKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWL AVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWL ARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAM YALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKN RDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWGDKQEGLQGETASNK QERPGEDTLAANES" mat_peptide 554..1078 /product="p19 matrix protein" mat_peptide 1085..1270 /product="p10" mat_peptide 1271..1990 /product="p27 capsid protein" mat_peptide 2018..2284 /product="p12 nucleoprotein" mat_peptide 2717..3685 /product="p32 integrase" misc_recomb 2312..2328 /note="17 bp not homologous to ALV" LTR 5569..5842 /note="3' LTR" ORIGIN 1 tgtagtcaaa tagagccaga ggcaacttga atagtctaaa gaccaaataa ggaaaaagca 61 agacattcca tatgctcatt ggtggcgact agataaggaa ggaatgacgc aaggacatat 121 gggcgtagac gaagctatgt acgattatat aagctgttgc caccatcaaa taaacgccat 181 tttaccatcc accacattgg tgtgcacctg ggtagatgga cagaccgttg agtccctaac 241 gattgcgaac acctgaatga agcagaaggc ttcatttggt gaccccgacg tgatcgttag 301 ggaatagtgg tcggccacag acggcgtggc gatcctgccc tcatccgtct cgcttaacgg 361 agcgaggacg atgaccctag tagagggggc tgcggcttag gagggcagaa gctgagtgac 421 gtcggaggga gctccacggc cgggggccaa gataacctac cgagaactca gagagtcgtt 481 ggaagacggg aaggaagccc gacgactgag cagtccacct caggcacgat tccggtcgcc 541 ctgtggatca agcatggaag ccgtcataaa ggtgatttcg tccgcgtgta aaacctattg 601 cgggaaaacc tctccttcta agaaggaaat aggggccatg ctgtccctgt tacaaaagga 661 agggttgctt atgtctccct cagacttata ttccccgggg tcctgggatc ccattaccgc 721 ggcactcacc cagcgggcaa tggtacttgg gaaatcggga gagttaaaaa cctggggatt 781 ggttttgggg gcattgaagg cggctcgaga ggaacaggtt acatctgagc aagcaaagtt 841 ttggttggga ttagggggag ggagggtctc tcccccaggt ccggagtgca tcgagaaacc 901 agcaacggag cggcgaatcg acaaggggga ggaagtggga gaaacaactg tgcagcgaga 961 tgcgaagatg gcgccggagg aaacggccac acctaaaacc gttggcacat cctgctatca 1021 ttgcggaaca gctattggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt 1081 ggggagtggt ttgtatcctt ccctggcggg ggtgggagag cagcagggcc aggggggtga 1141 cacacctcgg ggggcggaac agccaagggc ggagccaggg cacgcgggtc tggcccctgg 1201 gccggccctg actgactggg caaggatcag ggaggagctt gcgagtacag gtccgcccgt 1261 ggtggccatg cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa 1321 attgatcaca agactggctg atacggtcag gaccaagggc ttacgatccc cgatcactat 1381 ggcagaagtg gaagcgctta tgtcctcccc gctgctgccg catgacgtca cgaatctaat 1441 gagagttatt ttaggacctg ccccatatgc cttatggatg gacgcttggg gagtccaact 1501 acagacggtt atagcggcag ccactcgcga cccccgacac ccagcgaacg gtcaagggcg 1561 gggggaacgg actaacttgg atcgtttaaa gggtttggcg gatggaatgg ccggcaatcc 1621 agagggtcag gctgcattat taagaccggg ggaactggtt gctattacgg cgtcggctct 1681 ccaggcgttt agagaggtcg ctcggttggc ggaacccaca gacccgtggg cggaaattac 1741 gcagggacca tctgagtcct ttgtggattt tgccaatcgt cttataaagg cggttgaagg 1801 gtcagatctc ccaccttccg cgcgggctcc ggtgatcatt gactgcttta ggcagaagtc 1861 acagccagat attcagcagc ttatacgggc agcaccctcc acgctgacca ccccaggaga 1921 gataatcaaa tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc 1981 cgcggccatg tcgtctgcta tccagccctt agttatggca gtagtcaata gagagaggga 2041 tggacaaact gggtcgggtg gtcgtgcccg agggctctgc tacacttgtg gatccccggg 2101 acattatcag gcgcagtgcc cgaaaaaacg aaagtcagga aacagccgtg agcgatgtca 2161 gctgtgtgac gggatgggac acaacgctaa acagtgcaga aggcgggatg gcaaccaggg 2221 acaacgccca ggaagaggcc tctcttcggg gccgtggccc gtctctgagc agcctgccgt 2281 ctcgttagcg atgacaatgg aacataaaga tgtttatata aacataaagg gacccactgt 2341 ctttaccgac gcctcctcaa gcacccataa gggggtggta gtctggaggg agggcccaag 2401 gtgggagata aaagaaatag ctgatttggg ggcaagtgta caacaactgg aagcacgcgc 2461 tgtggccatg gcacttctgc tgtggccgac agcgcccact aatgtagtga ctgactccgc 2521 gtttgttgcg aaaatgttac tcaagatggg acaggaggga gtcccgtcta cagcggcggc 2581 ttttatttta gaggatgcgt taagccaaag gtcagccatg gccgccgttc tccacgtgcg 2641 gagtcattct gaagtgccag ggtttttcac agaaggaaat gacgtggcag atagccaagc 2701 cacctttcaa gcgtatccct tgagagaggc taaagatctt catactgctc tccatattgg 2761 accccgcgcg ctatccaaag cgtgtaatat atctatgcag caggctaggg aggttgttca 2821 gacctgcccg cattgtaatt cagcccctgc gttggaggcc ggggtaaacc ctaggggttt 2881 gggaccccta cagatatggc agacagactt tacgcttgag cctagaatgg ccccccgttc 2941 ctggctcgct gttactgtgg ataccgcctc atcggcgata gtcgtaactc agcatggccg 3001 tgtcacatcg gttgctgcac aacatcattg ggccacggct atcgccgttt tgggaagacc 3061 aaaggccata aaaacagata atgggtcctg tttcacgtct aaatccacgc gagagtggct 3121 cgcgagatgg gggatagcac acaccaccgg gattccgggt aattcccagg gtcaagctat 3181 ggtagagcgg gccaaccggc tcctgaaaga taagatccgt gtgcttgcgg agggggacgg 3241 ctttatgaaa agaatcccca ccagcaaaca gggggaacta ctagccaagg caatgtatgc 3301 cctcaatcac tttgagcgtg gtgaaaacac aaaaacaccg atacaaaaac actggagacc 3361 taccgttctt acagaaggac ccccggttaa aatacgaata gagacagggg agtgggaaaa 3421 aggatggaac gtgctggtct ggggacgagg ttatgcagct gtgaaaaaca gggacactga 3481 taaggttatt tgggtaccct ctcgaaaagt taaaccggac atcacccaaa aggatgaggt 3541 gactaagaaa gatgaggcga gccctctttt tgcaggcatt tctgactgga taccctgggg 3601 agacaagcaa gaaggactcc aaggagaaac cgctagcaac aagcaagaaa gacccggaga 3661 agacaccctt gctgccaacg agagttaatt atattattgg tgtcctggtc ttgtgtgagg 3721 ttacgggggt aagagctgat gtccacttac tcgagcagcc agggaacctt tggattacat 3781 gggccaaccg tacaggccaa acggatttct gcctctctac acagtcagcc acctcccctt 3841 ttcaaacatg tttgataggt atcccgtccc ctatttccga aggtgatttt aagggatacg 3901 tctctgataa ttgcaccacc ttgggaactg accggttagt ctcgtcagcc agcattaccg 3961 gcggccctga caacagcacc accctcactt atcgaaaggt ttcatgcttg ctgttaaagc 4021 tgaatgtctc tatgtgggat gagccaccgg aactacagct gctaggttcc cagtctcttc 4081 ctaacattac taatattact cagatttctg gtgtaaccgg gggatgcgta ggcttcaccc 4141 cacactccaa tccaagtggt gtctacgggt ggggccggag acaggttaca cacaacttct 4201 tgatcgcccc gtgggtcaat cctttcttta acagcgcttc taactccacg gaaccgttta 4261 cggtggtgac agcggatagg cacaatcttt ttatggggag tgagtactgc ggtgcatatg 4321 gctacagatt ttgggaaata tataattgct cacacagatt tgataatttt gatatttaca 4381 cctgtggaga tgtgcagaca gtcaaatccc ccgaaaaaca gtgtgtgggg ggaggaggta 4441 tatgggttaa tcaatcaaag gaaattaatg agacagagcc gttcagtttt actgcgaact 4501 gtacagctag taatttgggt aatgtcagcg gatgttgtgg aaaaacgacc acgattctcc 4561 catcaggggc gtggatcgac agcacacaag gtagtttcac caaaccaaaa gcgctaccac 4621 ccgcaatttt cctcatttgt ggggatcgcg catggcaagg aattcccagt cgtccggtag 4681 ggggcccctg ctatttaggc aagcttacca tgttagcacc taaccataca gatattctca 4741 aggtgcttgc caattcatcg cggacaggta taagacgtaa acgaaacacc tcacacctgg 4801 atgatacatg ctcagatgaa gtgcagcttt ggggtcctac agcaagaatc tttgcatcta 4861 tcttagcccc gggggtagca gctgcgcaag ccttaagaga aattgagaga ctagcctgtt 4921 ggtccgttaa acaggctaac ttgacaacat cactcctcgg ggacttattg gatgatgtca 4981 cgagtattcg acacgcggtc ctgcagaacc gagcggctat tgacttcttg ctcctagctc 5041 acggccatgg ctgtgaggac gttgccggaa tgtgttgttt caatctgagt gatcacagtg 5101 agtctataca gaagaagttc cagctaatga aggaacatgt caataagatc ggcgtggaca 5161 gcgacccaat cggaagttgg ctgcgaggat tattcgaggg aataggggaa tgggccgttc 5221 atttgctgaa aggactgctt ttggggcttg tagttatttt gttgctagta gtgtgcctgc 5281 cttgcctttt gcaaattgtg tccagtagca tccgaaagat gattaataat tcaatcagct 5341 atcacacgga atataagaag ttgcaaaagg cttgtaggca gcccgaaaat ggagcagtgt 5401 aaagcagtac atgggtggtg gtatgaaact tgcgaatcgg gctgtaacgg ggcaaggctt 5461 gactgagggg accatagtat gtataggcga aaggcggggc ttcggttgta cgcggttagg 5521 agtcccctca ggatatagta gttgcgcttt tgcataggga gggggaaatg tagtcaaata 5581 gagccagagg caacttgaat agtctaaaga ccaaataagg aaaaagcaag acattccata 5641 tgctcattgg tggcgactag ataaggaagg aatgacgcaa ggacatatgg gcgtagacga 5701 agctatgtac gattatataa gctgttgcca ccatcaaata aacgccattt taccatccac 5761 cacattggtg tgcacctggg tagatggaca gaccgttgag tccctaacga ttgcgaacac 5821 ctgaatgaag cagaaggctt ca //