AY013303 Avian leukosis virus strain ev-1 LOCUS AY013303 7525 bp DNA linear VRL 02-APR-2001 DEFINITION Avian leukosis virus strain ev-1, complete genome. ACCESSION AY013303 VERSION AY013303.1 GI:13508434 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 (bases 1 to 7525) AUTHORS Johnson,J.A. and Heneine,W. TITLE Characterization of endogenous avian leukosis viruses in chicken embryonic fibroblast substrates used in production of measles and mumps vaccines JOURNAL J. Virol. 75 (8), 3605-3612 (2001) MEDLINE 21165271 PUBMED 11264350 REFERENCE 2 (bases 1 to 7525) AUTHORS Johnson,J.A. and Heneine,W. TITLE Direct Submission JOURNAL Submitted (08-NOV-2000) HIV and Retrovirology Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd., Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..7525 /organism="Avian leukosis virus" /proviral /mol_type="genomic DNA" /strain="Endogenous avian leukosis virus 1; ev-1" /specific_host="Gallus gallus" /db_xref="taxon:11864" LTR 1..274 /note="5' LTR" CDS join(554..571,5253..7085) /codon_start=1 /product="Pr57 env polyprotein precursor" /protein_id="AAK13201.1" /db_xref="GI:13508437" /translation="MEAVIKAFLTGYPGETSKKDSKEKPLATSKKDPEKTPLLPTRVN YILIIGVLVLCEVTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSATSPFQTCLI GIPSPISEGDFKGYVSDNCTTLGTDRLVSSASITGGPDNNTTLTYRKVSCLLLKLNVS MWDEPPELQLLGSQSLPNITNITQISGVTGGCVGFAPHSNPSGVYGWGRRQVTHNFLI APWVNPFFNSASNSTEPFTVVTADRHNLFMGSEYCGAYGYRFWEIYNCSHRFDNFDIY TCGDVQTVKSPEKQCVGGGGIWVNQSKEINETEPFSFTANCTASNLGNVSGCCGKTTT ILPSGAWIDSTQGSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPNH TDILKVLANSSRTGIRRKRNTSHLDDTCSDEVQLWGPTARIFASILAPGVAAAQALRE IERLACWSVKQANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMC CFNLSDHSESIQKKFQLMKEHVNKIGVDSDPIGSWLRGLFEGIGEWAVHLLKGLLLGL VVILLLVVCLPCLLQIVSSSIRKMINNSISYHTEYKKLQKACRQPENGAV" mat_peptide 5427..6404 /product="gp85 receptor-binding envelope protein" mat_peptide 6405..7082 /product="gp37 transmembrane envelope protein" CDS join(554..2599,2599..5067) /note="a +1 frameshift mutation causes premature termination; polyprotein derived from -1 ribosomal frameshift; ribosomal slippage" /codon_start=1 /product="truncated Pr160 gag-pol polyprotein precursor" /protein_id="AAK13200.1" /db_xref="GI:13508436" /translation="MEAVIKVISSACKTYCGEISPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTAQRDAKMAPEKMATPKTVGTSCYQCGTA TGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPWGAEQPRAEPGHAGLAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG SWPVSEQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR REYPRKRLSAGPRAPLDKFIGRATVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLV ALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQG APVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQ GMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLE RAGFTISPDKIQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRP ALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEG AVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTF GKEVDILLLPACFREDLPLPEGILLALRGFAGKIRSSDTPSIFDIARPLHVSLKVRVT DHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWP TTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPG FFTEGNDVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHC NSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTS VAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMV ERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKTLE TYRSYRRTPG" mat_peptide 2677..5064 /product="truncated reverse transcriptase-beta subunit" mat_peptide 2677..4392 /product="reverse transcriptase-alpha subunit" mat_peptide 4393..5064 /product="truncated integrase" CDS 554..2659 /codon_start=1 /product="Pr76 gag polyprotein precursor" /protein_id="AAK13199.1" /db_xref="GI:13508435" /translation="MEAVIKVISSACKTYCGEISPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPECIEKPATERRIDKGEEVGETTAQRDAKMAPEKMATPKTVGTSCYQCGTA TGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPWGAEQPRAEPGHAGLAPGPA LTDWARIREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPW AEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG SWPVSEQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" mat_peptide 554..1078 /product="p19 matrix protein" mat_peptide 1085..1270 /product="p10" mat_peptide 1271..1990 /product="p27 capsid protein" mat_peptide 2018..2284 /product="p12 nucleoprotein" mat_peptide 2285..2656 /product="p15 protease" misc_feature 5026 /note="site of +1 frameshift mutation" LTR 7252..7525 /note="3' LTR" ORIGIN 1 tgtagtcaaa tagagccaga ggcaacttga atagtctaaa gaccaaataa ggaaaaagca 61 agacattcca tatgctcatt ggtggcgact agataaggaa ggaatgacgc aaggacatat 121 gggcgtagac gaagctatgt acgattatat aagctgttgc cgccatcaaa taaacgccat 181 tttaccatcc accacattgg tgtgcacctg ggtagatgga cagaccgttg agtccctaac 241 gattgcgaac acctgaatga agcagaaggc ttcatttggt gaccccgacg tgatcgttag 301 ggaatagtgg tcggccacag acggcgtggc gatcctgccc tcatccgtct cgcttaacgg 361 agcgaggacg atgaccctag tagagggggc tgcggcttag gagggcagaa gctgagtgac 421 gtcggaggga gctccacggc cgggggccaa gataacctac cgagaactca gagagtcgtt 481 ggaagacggg aaggaagccc gacgactgag cagtccaccc caggcacgat tccggtcgcc 541 ctgtgggtct agcatggaag ccgtcattaa ggtgatttcg tccgcgtgta aaacctattg 601 cggggaaatc tctccttcta agaaggaaat aggggccatg ttgtccctgt tacaaaagga 661 agggttgctt atgtctccct cagatttata ttccccgggg tcctgggatc ccatcactgc 721 ggcgctctcc cagcgggcaa tggtacttgg gaaatcggga gagttaaaaa cctggggatt 781 ggttttgggg gcattgaagg cggctcgaga ggaacaggtt acatctgagc aagcaaagtt 841 ttggttggga ttagggggag ggagggtctc tcccccaggt ccggagtgca tcgagaaacc 901 agcaacggag cggcgaatcg acaaagggga ggaagtggga gaaacaactg cgcagcgaga 961 tgcgaagatg gcgccggaga aaatggccac acctaaaacc gttggcacat cctgctatca 1021 gtgcggaaca gctactggct gtaattgcgc cacagcctcg gcccctcctc ctccttatgt 1081 ggggagtggt ttgtatcctt ccctggcggg ggtgggagag cagcagggcc aggggggtga 1141 cacaccttgg ggggcggaac agccaagggc ggagccaggg cacgcgggtc tggcccctgg 1201 gccggccctg actgactggg caaggatcag ggaggagctt gcgagtacag gtccgcccgt 1261 ggtggccatg cctgtagtga ttaagacaga gggacccgcc tggacccctc tggagccaaa 1321 attgatcaca agactggctg atacggtcag gaccaagggc ttacgatccc cgatcactat 1381 ggcagaagtg gaagcgctca tgtcctcccc gctgctgccg catgacgtca cgaatctaat 1441 gagagttatt ttaggacctg ccccatatgc cttatggatg gacgcttggg gagtccaact 1501 acagacggtt atagcggcag ccactcgcga cccccgacac ccagcgaacg gtcaagggcg 1561 gggggaacgg actaacttgg atcgtttaaa gggtttggcg gatggaatgg ccggcaatcc 1621 agagggtcag gctgcattat taagaccggg ggaactggtt gctattacgg cgtcggctct 1681 ccaggcgttt agagaggtcg ctcggttggc ggaacccaca gacccgtggg cggaaattac 1741 gcagggacca tctgagtcct ttgtggattt tgccaatcgt cttataaagg cggttgaagg 1801 gtcagatctc ccaccttccg cgcgggctcc ggtgatcatt gactgcttta ggcagaagtc 1861 acagccagat attcagcagc ttatacgggc agcaccctcc acgctgacca ccccaggaga 1921 gataatcaaa tatgtgctag acaggcagaa gactgcccct cttacggatc aaggcatagc 1981 cgcggccatg tcgtctgcta tccagccctt agttatggca gtagtcaata gagagaggga 2041 tggacaaact gggtcgggtg gtcgtgcccg agggctctgc tacacttgtg gatccccggg 2101 acattatcag gcgcagtgcc cgaaaaaacg aaagtcagga aacagccgtg agcgatgtca 2161 gctgtgtgac gggatgggac acaacgctaa acagtgcaga aggcgggatg gcaaccaggg 2221 ccaacgccca ggaagaggcc tctcttcggg gtcgtggccc gtctctgagc agcctgccgt 2281 ctcgttagcg atgacaatgg aacataaaga tcgccccttg gttagggtca ttctgactaa 2341 cactgggagt catccggtca aacagcgttc ggtgtatatc accgcgctgt tggactctgg 2401 agcggacatc actattattt cagaggagga ctggcccacc gattggccag tgatggaggc 2461 cgcgaacccg cagatccatg ggataggagg gggaattccc atgcgaaaat cccgggatat 2521 gatagaggtg ggggttatta accgagacgg gtctttggag cgacccctgc tcctcttccc 2581 cgcagtagct atggttagag ggagtatcct aggaagagat tgtctgcagg gcctagggct 2641 ccgcttgaca aatttatagg gagggccact gttcttactg ttgcgctaca tctggctatt 2701 ccgctcaaat ggaagccaga ccacacgcct gtgtggattg accagtggcc ccttcctgaa 2761 ggtaaacttg tagcgctaac gcaattagtg gaaaaagaat tacagttagg acatatagaa 2821 ccttcactta gttgttggaa cacacctgtc tttgtgatcc ggaaggcttc cgggtcttat 2881 cgcttattgc atgacttgcg cgctgttaac gccaagcttg ttccttttgg ggccgtccaa 2941 cagggggcgc cagttctctc cgcgctcccg cgtggctggc ccctgatggt cctagacctc 3001 aaggattgct tcttttctat tcctcttgcg gaacaagatc gcgaagcttt tgcatttacg 3061 ctcccctctg tgaataacca ggcccccgct cgaagattcc aatggaaggt cttgccccaa 3121 gggatgacct gttctcccac tatctgtcag ttggtggtgg gtcaggtact tgagcccttg 3181 cgactcaagc acccatctct gcgcatgttg cattatatgg atgatctttt gctagccgcc 3241 tcaagtcatg atgggttgga agcggcaggg gaggaggtta tcagtacatt ggaaagagcc 3301 gggttcacca tttcgcctga taagatccag agggagcccg gagtacaata tcttgggtac 3361 aagttaggca gtacgtatgt agcacccgta ggcttggtag cagaacccag gatagccacc 3421 ttgtgggatg ttcaaaagct ggtggggtca cttcagtggc ttcgcccagc gttaggaatc 3481 ccgccacgac tgatgggccc cttttatgag cagttacgag ggtcagatcc taacgaggcg 3541 agggaatgga atctagacat gaaaatggcc tggagagaga tcgtacagct cagcaccact 3601 gctgccttgg aacgatggga ccctgccctg cctctggaag gagcggtcgc tagatgtgaa 3661 cagggggcaa taggggtcct gggacaggga ctgtccacac acccaaggcc atgtttgtgg 3721 ttattctcca cccaacccac caaggcgttt actgcttggt tagaagtgct cacccttttg 3781 attactaagc tacgcgcttc ggcagtgcga acctttggca aggaggttga tatcctcctg 3841 ttgcctgcat gctttcggga ggaccttccg ctcccggagg ggatcctgtt agcccttagg 3901 gggtttgcag gaaaaatcag gagtagtgac acgccatcta tttttgacat tgcgcgtcca 3961 ctgcatgttt ctctgaaagt gagggttacc gaccaccctg taccgggacc cactgtcttt 4021 accgacgcct cctcaagcac ccataagggg gtggtagtct ggagggaggg cccaaggtgg 4081 gagataaaag aaatagctga tttgggggca agtgtacaac aactggaagc acgcgctgtg 4141 gccatggcac ttctgctgtg gccgacaacg cccactaatg tagtgactga ctccgcgttt 4201 gtcgcgaaaa tgttactcaa gatgggacag gagggagtcc cgtctacagc ggcggctttt 4261 attttagagg atgcgttaag ccaaaggtca gccatggccg ccgttctcca cgtgcggagt 4321 cattctgaag tgccagggtt tttcacagaa ggaaatgacg tggcagatag ccaagccacc 4381 tttcaagcgt atcccttgag agaggctaaa gatcttcata ctgctctcca tattggaccc 4441 cgcgcgctat ccaaagcgtg taatatatct atgcagcagg ctagggaggt tgttcagacc 4501 tgcccgcatt gtaattcagc ccctgcgttg gaggccgggg taaaccctag gggtttggga 4561 cccctacaga tatggcagac agactttacg cttgagccta gaatggcccc ccgttcctgg 4621 ctcgctgtta ctgtggatac cgcctcatcg gcgatagtcg taactcagca tggccgtgtc 4681 acatcggttg ctgcacaaca tcattgggcc acggctatcg ccgttttggg aagaccaaag 4741 gccataaaaa cagataacgg gtcctgcttc acgtctaaat ccacgcgaga gtggctcgcg 4801 agatggggga tagcacacac caccgggatt ccgggtaatt cccagggtca agctatggta 4861 gagcgggcca accggctcct gaaagataag atccgtgtgc ttgcggaggg ggacggcttt 4921 atgaaaagaa tccccaccag caaacagggg gaactactag ccaaggcaat gtatgccctc 4981 aatcactttg agcgtggtga aaacacaaaa acaccgatac aaaaaacact ggagacctac 5041 cgttcttaca gaaggacccc cggttaaaat acgaatagag acaggggagt gggaaaaagg 5101 atggaacgtg ctggtctggg gacgaggtta tgcagctgtg aaaaacaggg acactgataa 5161 ggttatttgg gtaccctctc gaaaagttaa accggacatc acccaaaagg atgaggtgac 5221 taagaaagat gaggcgagcc ctctttttgc aggcatttct gactggatac cctggggaga 5281 caagcaagaa ggactccaag gagaaaccgc tagcaacaag caagaaagac ccggagaaga 5341 cacccttgct gccaacgaga gttaattata ttctcattat tggtgtcttg gtcttgtgtg 5401 aggttacggg ggtaagagct gatgtccact tactcgagca gccagggaac ctttggatta 5461 catgggccaa ccgtacaggc caaacggatt tctgcctctc tacacagtca gccacctccc 5521 cttttcaaac atgtttgata ggtatcccgt cccctatttc cgaaggtgat tttaagggat 5581 acgtctctga taattgcacc accttgggaa ctgaccggtt agtctcgtca gccagcatta 5641 ccggcggccc tgacaacaac accaccctca cttatcgaaa ggtttcatgc ttgctgttaa 5701 agctgaatgt ctctatgtgg gatgagccac cggaactaca gctgctaggt tcccagtctc 5761 tccctaacat tactaatatt actcagattt ctggtgtaac cgggggatgc gtaggcttcg 5821 ccccacactc caatccaagt ggtgtctacg ggtggggccg gagacaggtt acacacaact 5881 tcttgatcgc cccgtgggtc aatcctttct ttaacagcgc ttctaactcc acggaaccgt 5941 ttacggtggt gacagcggat aggcacaatc tttttatggg gagtgagtac tgcggtgcat 6001 atggctacag attttgggaa atatataatt gctcacacag atttgataat tttgatattt 6061 acacctgtgg agatgtgcag acagtcaaat cccccgaaaa acagtgtgtg gggggaggag 6121 gtatatgggt taatcaatca aaggaaatta atgagacaga gccgttcagt tttactgcga 6181 actgtacagc tagtaatttg ggtaatgtca gcggatgttg tggaaaaacg accacgattc 6241 tcccatcagg ggcgtggatc gacagcacac aaggtagttt caccaaacca aaagcgctac 6301 cacccgcaat tttcctcatt tgtggggatc gcgcatggca aggaattccc agtcgtccgg 6361 tagggggccc ctgctattta ggcaagctta ccatgttagc acctaaccat acagatattc 6421 tcaaggtgct tgccaattca tcgcggacag gtataagacg taaacgaaac acctcacacc 6481 tggatgatac atgctcagat gaagtgcagc tttggggtcc tacagcaaga atctttgcat 6541 ctatcttagc cccgggggta gcagctgcgc aagccttaag agaaattgag agactagcct 6601 gttggtccgt taaacaggct aacttgacaa catcactcct cggggactta ttggatgatg 6661 tcacgagtat tcgacacgcg gtcctgcaga accgagcggc tattgacttc ttgctcctag 6721 ctcacggcca tggctgtgag gacgttgccg gaatgtgttg tttcaatctg agtgatcaca 6781 gtgagtctat acagaagaag ttccagctaa tgaaggaaca tgtcaataag atcggcgtgg 6841 acagcgaccc aatcggaagt tggctgcgag gattattcga gggaataggg gaatgggccg 6901 ttcatttgct gaaaggactg cttttggggc ttgtagttat tttgttgcta gtagtgtgcc 6961 tgccttgcct tttgcaaatt gtgtccagta gcatccgaaa gatgattaat aattcaatca 7021 gctatcacac ggaatataag aagttgcaaa aggcttgtag gcagcccgaa aatggagcag 7081 tgtaaagcag tacatgggtg gtggtatgaa acttgcgaat cgggctgtaa cggggcaagg 7141 cttgactgag gggaccatag tatgtatagg cgaaaggcgg ggcttcggtt gtacgcggtt 7201 aggagtcccc tcaggatata gtagttgcgc ttttgcatag ggagggggaa atgtagtcaa 7261 atagagccag aggcaacttg aatagtctaa agaccaaata aggaaaaagc aagacattcc 7321 atatgctcat tggtggcgac tagataagga aggaatgacg caaggacata tgggcgtaga 7381 cgaagctatg tacgattata taagctgttg ccgccatcaa ataaacgcca ttttaccatc 7441 caccacattg gtgtgcacct gggtagatgg acagaccgtt gagtccctaa cgattgcgaa 7501 cacctgaatg aagcagaagg cttca //