AB112960 Avian leukosis virus LOCUS AB112960 7448 bp RNA linear VRL 03-MAR-2004 DEFINITION Avian leukosis virus genomic RNA, complete genome. ACCESSION AB112960 VERSION AB112960.1 GI:32188034 KEYWORDS . SOURCE Avian leukosis virus ORGANISM Avian leukosis virus Viruses; Retroid viruses; Retroviridae; Alpharetrovirus. REFERENCE 1 AUTHORS Tomioka,Y., Ochiai,K., Ohashi,K., Ono,E., Toyoda,T., Kimura,T. and Umemura,T. TITLE Genome sequence analysis of the avian retrovirus causing so-called fowl glioma and the promoter activity of the long terminal repeat JOURNAL J. Gen. Virol. 85 (Pt 3), 647-652 (2004) PUBMED 14993650 REFERENCE 2 (bases 1 to 7448) AUTHORS Tomioka,Y., Ochiai,K., Ohashi,K., Ono,E., Toyoda,T., Kimura,T. and Umemura,T. TITLE Direct Submission JOURNAL Submitted (22-JUN-2003) Yukiko Tomioka, Graduate School of Veterinary Medicine, Hokkaido University, Laboratory of Comparative Pathology; Nishi 9-chome, Kita 18-jo, Kita-ku, Sapporo, Hokkaido 060-0818, Japan (E-mail:ytomi@vetmed.hokudai.ac.jp, Tel:81-11-706-5192, Fax:81-11-706-5194) FEATURES Location/Qualifiers source 1..7448 /organism="Avian leukosis virus" /mol_type="genomic RNA" /db_xref="taxon:11864" 5'UTR 1..382 repeat_region 1..21 /standard_name="R" /rpt_type=direct repeat_region 22..99 /standard_name="U5" /rpt_type=direct gene join(383..400,5081..6898) /gene="env" CDS join(383..400,5081..6898) /gene="env" /codon_start=1 /product="envelope protein" /protein_id="BAC78441.1" /db_xref="GI:32188035" /translation="MEAVIKAFLTGHPGKVSKKDSKKKSLATSKKDPEKTPLLPTRVN YILIIGVLVLCEVTGVRADVHLLEQPGNLWITWANRTGQTDFCLSTQSATSPFQTCLI GIPSPISEGDFKGYVSGSCTTLGTHRLVSSGIPGGPDNSTTLTYRKVSCLLLKLNVSL LDEPSELQLLGSQSLPNITNITQIPSVAGGCIGFTPYGSPAGVYGWDRREVTHILLTD PGSNPFFDKASKSSKPFTVVTADRHNLFMGSEYCGAYGYRFWEMYNCSQMRQWSICMD VWGRGLPESWCTSTGGIWVNQSKVINETKPFSFTVNCTGSNLGNVSGCCGESITIFPP GAWVDSTQGSFTKPKALPPGIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPNHTDIL KILANSSRTGIRRKRSISHLDDTCSDEVQLWGPTARIFASILAPGVAAAQALREIERL ACWSAKQANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCCFNL SDHSESIQKKFQLMKEHVNKIGVDSDPIGSWLRGLFGGIGEWAVHLLKGLLLGLVVIL LLVVCLPCLLQFVSSSIRKMIDSSLGYREECRKLQKASRQPAKAV" mat_peptide 5255..6289 /gene="env" /product="gp85 (SU) domain of env" mat_peptide 6290..6895 /gene="env" /product="gp37 (TM) domain of env" gene 383..2488 /gene="gag" CDS 383..2488 /gene="gag" /codon_start=1 /product="gag protein" /protein_id="BAC78442.1" /db_xref="GI:32188036" /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD LYSPGSWDPITAALSQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG GRVSPPGPESIEKPATERRVDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA LTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITM AEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW ADITQGPSESFVDFANRLIKAVEGSDLPPTARAPVIIDCFRQKSQPDIQQLIRAAPST LTTPGEIIKYVLDRQKTAPLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGPGGRARGL CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPGRGLSSG PWPVSEQPAVSLAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE EDWPTDWPVVDTANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVR GSILGRDCLQGLGLRLTNL" gene 2506..5193 /gene="pol" CDS <2506..5193 /gene="pol" /codon_start=1 /product="polymerase" /protein_id="BAC78443.1" /db_xref="GI:32188037" /translation="TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQL GHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWP LMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQ REPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPF YEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGV LGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPAC FREDLPLPEGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTD ASSSTHKGVVVWREGPRWEIKEIADSGASVQQLEARAVAMALLLWPTTPTNVVTDSAF VAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQ ATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNP RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIA VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIR VLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKI RIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPL FAGISDWAPWKGEQEGLQEEVASNKQERPGEDTLAANES" 3'UTR 6898..7426 repeat_region 7203..7427 /standard_name="U3" /rpt_type=direct repeat_region 7428..7448 /standard_name="R" /rpt_type=direct ORIGIN 1 gccattttac cccccaccac attggtgtgc acctgggttg atggccggac cgttgattcc 61 ctgacgtcta cgagcacctg catgaagcag aaggcttcat ttggtgaccc cgacgtgatt 121 cgcgttaggg aatagtggtc ggccacggac ggcgtggcga tcctgtcctc atccgtctcg 181 cttattcggg gagcggacga tgaccctggt agagggggct gcggcttagg aggacagaag 241 ctgagtggcg tcggagggag ctctactgca gggagccaac acaccctacc gagcactcag 301 agagtcgttg gaagacggga agggaacccg acgactgagc ggtccgcccc agacgtgatt 361 ttggtcgccc ggtggatcaa gcatggaagc cgtcataaag gtgatttcgt ccgcgtgtaa 421 aacctattgc gggaaaacct ctccttctaa gaaggaaata ggggccatgc tgtccctgtt 481 acaaaaggaa gggttgctta tgtctccctc agacttatat tccccggggt cctgggatcc 541 tattaccgcg gcgctctccc agcgggctat ggtacttggg aaatcgggag agttaaaaac 601 ctggggattg gttttggggg cattgaaggc ggctcgagag gaacaggtta catctgagca 661 agcaaagttt tggttgggat tagggggagg gagggtctct cccccaggtc cggagagcat 721 tgagaaacca gctacggaac ggcgagtcga caagggggag gaagtgggag aaacaactgt 781 gcagcgagat gcgaagatgg cgccggagga aacggccaca cctaaaaccg ttggtacatc 841 ctgctaccat tgcggaacag ctattggctg taattgcgcc acagcctcgg ctcctcctcc 901 tccttatgtg gggagtggtt tgtatccttc cctggcgggg gtgggagagc agcagggcca 961 ggggggtgac acacctcggg gggcggaaca gccaagggcg gagccagggc atgcgggtca 1021 ggctcctggg ccggccctga ctgactgggc aagggtcagg gaggagcttg cgagtactgg 1081 tccgcccgtg gtggccatgc ctgtagtgat taagacagag ggacccgcct ggacccctct 1141 ggagccaaaa ttgatcacaa gactggctga tacggtcagg accaagggct tacgatcccc 1201 gattactatg gcagaggtgg aagcgcttat gtcctccccg ctgctgccgc atgacgtcac 1261 gaatctaatg agagttattt taggacctgc cccatatgcc ttatggatgg acgcttgggg 1321 agtccaactc cagacggtta tagcggcagc cactcgtgac ccccgacacc cggcgaacgg 1381 tcaagggcgg ggggaacgga ctaacttgga tcgcttaaag ggcttagctg atgggatggt 1441 gggcaacccg cagggtcagg ccgcattatt aagaccgggg gaattggttg ctattacggc 1501 gtcggctctc caggcgttca gagaggttgc ccggctggcg gagcctgcag gtccatgggc 1561 ggacatcacg cagggaccat ctgagtcctt tgttgatttt gccaatcggc ttataaaagc 1621 ggtcgaggga tcagatctcc cacctaccgc gcgggctccg gtgatcattg actgctttag 1681 gcagaagtcg cagccagaca ttcagcagct tatacgggca gcaccctcca cgctgaccac 1741 cccaggagag ataatcaagt atgtgctaga taggcagaag actgcccctc ttacggatca 1801 aggcatagcc gcggccatgt catctgctat tcagccctta gttatggccg tggtcaatag 1861 agagagggat ggacagactg ggccgggtgg tcgtgcccgg ggactctgct acacttgtgg 1921 atccccggga cattaccagg cgcaatgccc gaaaaaacga aagtcaggaa acagccgtga 1981 gcgatgtcag ttgtgtgacg ggatgggaca caacgctaaa cagtgcagaa ggcgggatgg 2041 caaccagggc caacgcccag gaagaggcct ctcttcgggg ccgtggcccg tctctgagca 2101 gcctgccgtc tcgttagcga tgacaatgga acataaagat cgccccttgg ttagggtcat 2161 tctgactaac actgggagtc atccggtcaa acagcgttcg gtgtatatca ccgcgctgtt 2221 ggactccgga gcggacatca ctattatttc ggaggaggat tggcctactg attggccggt 2281 ggtggacacc gcgaacccac agatccatgg cataggaggg ggaattccca tgcgaaaatc 2341 tcgtgacatg atagagttgg gggttattaa ccgagacgga tccttggagc gacccctgct 2401 cctcttcccc gcagtggcta tggttagagg aagtattctg ggaagagatt gtctgcaggg 2461 cctagggctc cgcttgacaa atttatagga aaggccactg ttcttactgt tgcgctacat 2521 ctggctattc cgctcaaatg gaagccagac cacacgcctg tgtggattga ccagtggccc 2581 cttcctgaag gtaaactcgt agcgctaacg caattagtgg aaaaagaatt acagttagga 2641 catatagaac cctcacttag ttgttggaac acgcctgtct ttgtgatccg gaaggcttcc 2701 gggtcttatc gcttattgca tgacttgcgc gctgttaacg ccaagcttgt tccttttggg 2761 gccgtccaac agggggcgcc agttctctcc gcgctcccgc gtggctggcc cctgatggtt 2821 ctagacctca aggattgctt cttttctatt cctcttgcgg aacaagatcg cgaagctttt 2881 gcatttacgc tcccctctgt gaataaccag gcccccgctc gaagattcca atggaaggtc 2941 ttgccccaag ggatgacctg ttctcccact atctgtcagt tggtagtggg tcaggtactt 3001 gagcccttgc gactcaagca cccatctttg cgcatgttgc attatatgga tgatcttttg 3061 ctggccgcct caagtcatga tgggttggaa gcggcagggg aggaggttat cagtacattg 3121 gaaagagccg ggttcaccat ttcgcctgat aagatccaga gggagcccgg agtacaatat 3181 cttgggtaca agttaggcag tacgtatgta gcacccgtag gcttggtagc agaacccagg 3241 atagccacct tgtgggatgt tcaaaagctg gtggggtcac ttcagtggct tcgcccagcg 3301 ttaggaatcc cgccacgact gatgggcccc ttttatgagc agttacgagg gtcagatcct 3361 aacgaggcga gggaatggaa tctagatatg aaaatggcct ggagagagat cgtacagctc 3421 agcaccactg ctgccttgga gcgatgggac cctgccctgc ctctggaagg agcggtcgct 3481 agatgtgaac aaggggcaat aggggtcctg ggacagggac tgtccacaca cccaaggcca 3541 tgtctgtggt tattctccac ccaacccacc aaggcgttta ctgcttggtt agaagtgctc 3601 acccttttga ttactaagct acgtgcttcg gcagtgcgaa cctttggcaa ggaggttgat 3661 atcctcctgt tgcctgcatg cttccgggag gaccttccgc tcccggaggg gatcctgtta 3721 gcccttaagg ggtttgcagg aaaaatcagg agtagtgaca cgccatctat ctttgacatt 3781 gcgcgtccac tgcatgtttc tctgaaagtg agggttaccg accaccctgt accgggaccc 3841 actgtcttta ccgacgcctc ctcaagcacc cataaggggg tggtagtctg gagggagggc 3901 ccaaggtggg agataaaaga aatagctgat tcgggggcaa gtgtacaaca actggaagca 3961 cgcgctgtgg ccatggcact tctgctgtgg ccgacaacgc ccactaacgt agtgactgac 4021 tccgcgtttg ttgcgaaaat gttactcaag atgggtcagg agggagtccc gtctacagcg 4081 gcggctttta ttttagagga tgcgttaagc caaaggtcag ccatggccgc cgttctccac 4141 gtgcggagtc actctgaagt gccagggttt ttcacagaag gaaatgacgt ggcggatagc 4201 caagccacct tccaagcgta tccattgaga gaggctaagg atctccatac cgctctccat 4261 attggacccc gcgcgctatc caaagcgtgt aacatatcta tgcagcaggc tagggaggtt 4321 gttcagacct gcccgcattg taattcagcc cctgcgttgg aggccggggt aaaccctagg 4381 ggtttgggac ccctacagat atggcagaca gactttacac ttgagcctag aatggcccct 4441 cgttcctggc tcgctgttac tgtggatacc gcctcatcag cgatagtcgt aactcagcat 4501 ggccgtgtca catcggttgc tgcacaacat cattgggcca cggctatcgc cgttttggga 4561 agaccaaagg ccataaaaac agataacggg tcctgcttca cgtctaaatc cacgcgagag 4621 tggctcgcga gatgggggat agcacacacc accgggattc cgggtaattc ccagggtcaa 4681 gctatggtag agcgggccaa ccggctcctg aaagataaga tccgggtgct tgcggagggg 4741 gacggcttta tgaaaagaat ccccaccagc aaacaggggg aactactagc caaggcaatg 4801 tatgccctca atcactttga gcgtggtgaa aacacaaaaa caccgataca aaaacactgg 4861 agacctaccg ttcttacaga aggacccccg gttaaaatac gaatagagac aggggagtgg 4921 gaaaaaggat ggaacgtgct ggtctgggga cgaggttatg ccgctgtgaa aaacagggac 4981 actgataagg tcatttgggt accttctcga aaagttaaac cggacatcac ccaaaaggat 5041 gaggtgacta agaaagatga ggcgagccct ctttttgcag gcatttctga ctgggcaccc 5101 tggaaaggtg agcaagaagg actccaagaa gaagtcgcta gcaacaagca agaaagaccc 5161 ggagaagaca cccttgctgc caacgagagt taattatatt ctcattattg gtgtcctggt 5221 cttgtgtgag gttacggggg taagagctga tgttcactta ctcgagcagc cagggaacct 5281 ttggattaca tgggccaacc gtacaggcca aacggatttc tgcctctcta cacagtcagc 5341 cacctcccct tttcagacat gtttgatagg tatcccgtcc cctatttccg aaggtgattt 5401 taagggatac gtctctggta gctgcaccac cttgggaact caccggctag tctcgtcagg 5461 cattcctggc ggccctgata acagcacaac cctcacctat cggaaggttt catgcttgct 5521 gttaaaactg aatgtttccc tgttggacga gccatcagaa ctacaactgt taggttccca 5581 gtctctcccc aatataacta atattactca gatccctagt gtggctgggg gatgcatcgg 5641 cttcacccca tacggcagtc cggcgggtgt ttacggatgg gaccggagag aagttacaca 5701 catcctcctg actgacccag ggagcaatcc tttctttgat aaggcctcta agtcctcgaa 5761 accgtttaca gtagtgacag cggataggca caatctcttt atggggagtg aatattgtgg 5821 tgcatatggc tacagatttt gggagatgta caattgctca cagatgagac agtggtccat 5881 ttgtatggat gtgtggggcc gaggcctccc cgaaagttgg tgtacaagca caggaggtat 5941 atgggttaat caatcaaagg taattaatga gacaaagccg ttcagtttta ctgttaactg 6001 tacaggtagt aatttgggta acgttagcgg atgttgcggg gaatcaatca cgattttccc 6061 accaggggca tgggtcgaca gcacacaagg tagcttcact aaaccaaaag cactaccacc 6121 cggaattttc ctcatttgtg gagatcgcgc atggcaagga attcccagtc gtccggtagg 6181 gggcccctgc tatttaggca agcttaccat gttagcaccc aaccatacag acattctcaa 6241 aattcttgct aattcatcgc ggacaggtat aagacgtaaa cgaagcatct cacacctgga 6301 tgatacatgc tcagatgagg tgcagctttg gggtcctaca gcaagaatct ttgcatctat 6361 cttagccccg ggggtagcag cggcgcaagc cttaagagaa atcgagaggc tagcctgttg 6421 gtccgctaaa caggctaact tgacaacatc actcctcggg gacttattgg atgatgtcac 6481 gagtattcga cacgcggtcc tgcagaaccg agcggctatt gacttcttgc tcctagctca 6541 cggccatggc tgtgaggacg ttgccggaat gtgttgtttc aatctgagtg atcacagtga 6601 gtctatacag aagaagttcc agctaatgaa ggaacatgtc aataagatcg gcgtggacag 6661 cgacccaatc ggaagttggc tgcgaggatt attcggagga ataggagaat gggccgttca 6721 tttgctgaaa ggactgcttt tggggcttgt agttatcttg ttgctagtag tatgcttgcc 6781 ttgcctttta caatttgtat ctagtagcat tcgaaagatg attgatagtt cactcggcta 6841 ccgcgaggaa tgcaggaaat tacaaaaggc cagtagacag cctgcaaagg cagtgtaggc 6901 gggctcttgt attccgtgtg atagctggtt ggaccgttaa tcgatcggct ggcatacgga 6961 atataggagg tcgctgagta gtgcgcgagc aaaattcaag ctacagcaag gcaaggcttg 7021 accgacaatc gcatgaagaa tctgcttagg gttaggcgtt ttgcgctgct tcgcgatgta 7081 cgggccaggt atacgcgtaa ctgagggact agggtgtgta taggcgaaag gcggggaccc 7141 ggttgtacgt ggataggagt cccctcagat atagtaattg cgcttttgca tagggagggg 7201 gaaatgtagt cttatgcaat acccttatgt cacgatgaca cagcaatatg ccttataagg 7261 agaagaaggc actgtacacg ttgattggtg gaagtaaggt ggtatgatct tggtatgatc 7321 gtgccttatt aggaaggcaa cagacgggtc tgacatggat tggacgaact ccttagttcc 7381 gcattgcagg gatattgtat ttaagtgccc agcctaatac aataaacgcc attttacccc 7441 ccaccaca //