PDB-ID Organismus Prot-Seq Name Human-Protein-ID Pos. e-value HMM-Match-Seq. Pos. DNA/RNA Chain1 Chain2 Note PDB-ID
1A1F HOUSE MOUSE MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD THREE-FINGER ZIF268 ENSP00000239938 335-423 4e-48  334-371,363-399,391-423 DNA DA,DG,DC,DG,DT,DG,DG,DG,DA,DC,DC DT,DG,DG,DT,DC,DC,DC,DA,DC,DG,DC GACC site 1A1F
1A1G DSNR ZINC FINGER DA,DG,DC,DG,DT,DG,DG,DG,DC,DG,DT DT,DA,DC,DG,DC,DC,DC,DA,DC,DG,DC GCGT site 1A1G
1A1H MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD QGSR ZINC FINGER 3e-48 DA,DG,DC,DG,DT,DG,DG,DG,DC,DA,DC DT,DG,DT,DG,DC,DC,DC,DA,DC,DG,DC GCAC site 1A1H
1A1I MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD RADR ZIF268 + VARIANT 3e-49  1A1I
1A1J DA,DG,DC,DG,DT,DG,DG,DG,DC,DG,DT DT,DA,DC,DG,DC,DC,DC,DA,DC,DG,DC GCGT site 1A1J
1A1K DA,DG,DC,DG,DT,DG,DG,DG,DA,DC,DC DT,DG,DG,DT,DC,DC,DC,DA,DC,DG,DC GACC site 1A1K
1A1L MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD ZIF268 1e-50  DA,DG,DC,DG,DT,DG,DG,DG,DC,DA,DC DT,DG,DT,DG,DC,DC,DC,DA,DC,DG,DC GCAC site 1A1L
1AAY DA,DG,DC,DG,DT,DG,DG,DG,DC,DG,DT DT,DA,DC,DG,DC,DC,DC,DA,DC,DG,DC 1AAY
1ARD BAKER'S YEAST RSFVCEVCTRAFARQEHLKRHYRSHTNEK YEAST TRANSCRIPTION ADR1 // 1ARD
1ARE RSFVCEVCTRAFARQEALKRHYRSHTNEK 1ARE
1ARF RSFVCEVCTRAFARQEYLKRHYRSHTNEK 1ARF
1BBO HUMAN KYICEECGIR[ABA]KKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK HUMAN ENHANCER-BINDING MBP-1 ENSP00000368698 2086-2142 3e-27 2084-2118 1BBO
1BHI MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG CRE-BP1 ENSP00000376327 19-56 1e-18 18-49(x) 1BHI
1F2I HOUSE MOUSE MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT FUSION OF N-TERMINAL 17-MER ZIF12 ENSP00000239938 333-391 8e-28 334-371,363-399 DNA DA,DT,DG,DG,DG,DC,DG,DC,DG,DC,DC,DC,DA,DT 1F2I
1JK1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD ZIF268 335-423 1e-49  334-371,363-399,391-423 DA,DG,DC,DG,DT,DG,DG,DG,DC,DG,DG DT,DC,DC,DG,DC,DC,DC,DA,DC,DG,DC WT site 1JK1
1JK2 DA,DG,DC,DG,DT,DG,DG,DG,DC,DT,DG DT,DC,DA,DG,DC,DC,DC,DA,DC,DG,DC GCT site 1JK2
1KLR HUMAN KTYQCQYCEFRSADSSNLKTHIKTKHSKEK ZFY-6T[Y10F] // 1KLR
1KLS KTYQCQYCELRSADSSNLKTHIKTKHSKEK 1KLS
1LLM HOUSE MOUSE, BAKER'S YEAST MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER CHIMERA OF ZIF23-GCN4 ENSP00000239938 366-418 3e-28 363-399,391-423 DNA DT,DC,DC,DC,DA,DC,DG,DC,DG,DT,DG,DG,DG 1LLM
1NCS BAKER'S YEAST TLPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR SWI5 // 1NCS
1P7A HOUSE MOUSE GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV BF3, BKLF ENSP00000261438 312-345 1e-12 315-343 1P7A
1P47 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ ZIF268 ENSP00000239938 335-421 4e-49 334-371,363-399,391-423 DNA DG,DT,DG,DG,DC,DG,DT,DG,DG,DG,DC,DG,DG,DC,DG,DT,DG,DG,DG,DC,DG,DT DC,DA,DC,DG,DC,DC,DC,DA,DC,DG,DC,DC,DG,DC,DC,DC,DA,DC,DG,DC,DC,DA 1P47
1PAA BAKER'S YEAST KAYACGLCNRAFTRRDLLIRHAQKIHSGNL HISTIDINE-X4-HISTIDINE // 1PAA
1RMD HOUSE MOUSE NCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESK RAG1 ENSP00000299440 268-383 3e-62 354-383 1RMD
1SP1 HUMAN KKFACPECPKRFMRSDHLSKHIKTHQNKK SP1F3 ENSP00000329357 684-712 1e-13! 681-712 1SP1
1SP2 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK SP1F2 654-684 1e-15! 1SP2
1SRK HOUSE MOUSE GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS ZFPM1 ENSP00000326630 315-347 2e-11 316-350 1SRK
1TF3 AFRICAN CLAWED FROG MKRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK TFIIIA ENSP00000370532 95-182 3e-21 95-130,122-159,155-185 DNA DT,DT,DG,DG,DA,DT,DG,DG,DG,DA,DG,DA,DC,DC,DG DC,DG,DG,DT,DC,DT,DC,DC,DC,DA,DT,DC,DC,DA,DA 5S RNA GENE 1TF3
1TF6 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 91-272 2e-49 95-130,122-159,155-185,186-221,214-248,245-272 DA,DC,DG,DG,DG,DC,DC,DT,DG,DG,DT,DT,DA,DG,DT,DA,DC,DC,DT,DG,DG,DA,DT,DG,DG,DG,DA,DG,DA,DC,DC DT,DG,DG,DT,DC,DT,DC,DC,DC,DA,DT,DC,DC,DA,DG,DG,DT,DA,DC,DT,DA,DA,DC,DC,DA,DG,DG,DC,DC,DC,DG 5S RIBOSOMAL RNA GENE 1TF6
1U85 HOUSE MOUSE GSTGIKPFQCPDCDWSFSRSDHLALHRKRHMLV KLF3 ENSP00000261438 315-345 9e-12 315-343 1U85
1U86 GSTGIKPFQCTWPDCDRSFSRSDHLALHRKRHMLV 4e-11 1U86
1UBD HUMAN MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ YY1 ENSP00000262238 293-414 7e-72! 295-327,321-356,349-386,378-411 DNA DA,DG,DG,DG,DT,DC,DT,DC,DC,DA,DT,DT,DT,DT,DG,DA,DA,DG,DC,DG DC,DG,DC,DT,DT,DC,DA,DA,DA,DA,DT,DG,DG,DA,DG,DA,DC,DC,DC,DT ADENO-ASSOCIATED VIRUS P5 1UBD
1UN6 AFRICAN CLAWED FROG MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD TFIIIA ENSP00000370532 189-272 3e-21 186-221,214-248,245-272 RNA G,C,C,G,G,C,C,A,C,A,C,C,U,A,C,G,G,G,G,C,C,U,G,G,U,U,A,G,U,A,C,C,U,G,G,G,A,A,A,C,C,U,G,G,G,A,A,U,A,C,C,A,G,G,U,G,C,C,G,G,C 5S RIBOSOMAL RNA 1UN6
1VA2 HUMAN RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK SP1 ENSP00000329357 654-684 1e-15! 652-689 1VA2
1VA3 KKFACPECPKRFMRSDHLSKHIKTHQNKK 684-712 1e-13 681-712 1VA3
1WJP GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG ZINC FINGER PROTEIN 295 ENSP00000381523 713-806 1e-49! 706-747,749-772,772-812 1WJP
1X3C GSSGSSGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEEESGPSSG ZINC FINGER PROTEIN 292 ENSP00000342847 1952-2001 8e-25! 1967-1995 1X3C
1X5W GSSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSSG ZINC FINGER PROTEIN 64 ENSP00000216923 339-397 3e-19 339-371,369-397 1X5W
1X6E GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG ZINC FINGER PROTEIN 24 ENSP00000382015 276-330 9e-27! 275-309,302-337 1X6E
1X6F GSSGSSGLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQESGPSSG ZINC FINGER PROTEIN 462 ENSP00000363818 716-793 1e-28 731-762 1X6F
1X6H GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSSG CTCF ENSP00000264010 515-591 3e-39 518-546 1X6H
1XF7 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK WILMS' TUMOR PROTEIN // 1XF7
1XRZ KTYQCQYCE[ALC]RSADSSNLKTHIKTKHSKEK ZINC FINGER Y-CHROMOSOMAL // 1XRZ
1YUI FRUIT FLY PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV GAGA-FACTOR // DNA DG,DC,DC,DG,DA,DG,DA,DG,DT,DA,DC DG,DT,DA,DC,DT,DC,DT,DC,DG,DG,DC 1YUI
1YUJ // 1YUJ
1ZAA HOUSE MOUSE HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR ZIF268 ENSP00000239938 334-420 2e-49! 334-371,363-399,391-423 DA,DG,DC,DG,DT,DG,DG,DG,DC,DG,DT DT,DA,DC,DG,DC,DC,DC,DA,DC,DG,DC 1ZAA
1ZFD BAKER'S YEAST DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA SWI5 // 1ZFD
1ZNF AFRICAN CLAWED FROG [ACE]YKCGLCERSFVEKSALSRHQRVHKN[NH2] 31ST ZINC FINGER FROM XFIN // 1ZNF
2ADR BAKER'S YEAST RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE ADR1 ENSP00000318057 303-355 5e-11 300-336,328-360 2ADR
2COT HUMAN GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG ZINC FINGER PROTEIN 435 ENSP00000366527 222-291 6e-31 233-267,259-295 2COT
2CSH GSSGSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSSG ZINC FINGER PROTEIN 297B ENSP00000362563 367-467 3e-55 370-403,398-431 2CSH
2CT1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSSG CTCF ENSP00000264010 399-462 2e-31! 374-410,405-433,436-462 2CT1
2CTD GSSGSSGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPSSG ZINC FINGER PROTEIN 512 ENSP00000369040 141-223 4e-43! (x) 2CTD
2DLK GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG ZINC FINGER PROTEIN 692 ENSP00000305483 328-397 2e-34 329-353,356-389 2DLK
2DLQ HOUSE MOUSE GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG HKR3 ENSP00000366902 291-404 5e-59 289-322,347-381,376-402 2DLQ
2DMD HUMAN GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG ZINC FINGER PROTEIN 64 ENSP00000216923 174-257 1e-41 170-206 2DMD
2DRP FRUIT FLY MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI TRAMTRACK // DNA DC,DT,DA,DA,DT,DA,DA,DG,DG,DA,DT,DA,DA,DC,DG,DT,DC,DC,DG DT,DC,DG,DG,DA,DC,DG,DT,DT,DA,DT,DC,DC,DT,DT,DA,DT,DT,DA 2DRP
2EPP HUMAN GSSGSSGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISGPSSG ZINC FINGER PROTEIN 278 ENSP00000337520 281-344 5e-26 293-315 2EPP
2EPQ GSSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG ENSP00000215919 378-411 2e-13! 379-409 2EPQ
2EPR GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 350-384 2e-14! 353-386 2EPR
2EPS GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 409-453 2e-19 411-445 2EPS
2GHF MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTF ZHX1 ENSP00000378938 60-153 1e-52! 60-95,97-152 2GHF
2GLI ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG FIVE-FINGER GLI ENSP00000228682 234-388 5e-91! 236-260,265-304,297-334,329-365,360-389 DNA DT,DT,DT,DC,DG,DT,DC,DT,DT,DG,DG,DG,DT,DG,DG,DT,DC,DC,DA,DC,DG DA,DC,DG,DT,DG,DG,DA,DC,DC,DA,DC,DC,DC,DA,DA,DG,DA,DC,DG,DA,DA 2GLI
2HGH AFRICAN CLAWED FROG MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD TFIIIA ENSP00000370532 189-272 3e-21 186-221,214-248,245-272 RNA G,G,G,C,C,A,U,A,C,C,U,C,U,U,G,G,G,C,C,U,G,G,U,U,A,G,U,A,C,C,U,C,U,U,C,G,G,U,G,G,G,A,A,U,A,C,C,A,G,G,U,G,C,C,C 55-MER 2HGH
2J7J MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 189-270 7e-21 2J7J
2YT9 HUMAN GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSSG ZINC FINGER PROTEIN 278 ENSP00000215919 355-437 1e-45 353-386,379-409,411-445 2YT9
3ZNF RPYHCSYCNFSFKTKGNLTKHMKSKAHSKK ZINC FINGER ENSP00000368698 2113-2142 2e-11  ...2084-2118...,2083-2142(x) 3ZNF
4ZNF 4ZNF
5ZNF KTYQCQYCEYRSADSSNLKTHIKTKHSKEK // 5ZNF
7ZNF KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 7ZNF