# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: hmmermodlib/0052292.hmm # target sequence database: /u/praktikum/Downloads/Homo_sapiens.fasta # sequence reporting threshold: E-value <= 0.0001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 0052292 [M=53] Accession: 0052292 Description: C2H2 and C2HC zinc fingers Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-52 171.3 16.6 8.3e-14 51.6 0.1 5.9 6 ENSP00000217130 pep:known chromosome:NCBI36:20:62058499:6214 3.4e-52 171.3 16.6 8.3e-14 51.6 0.1 5.9 6 ENSP00000358904 pep:known chromosome:NCBI36:20:62058499:6207 7.9e-34 114.0 17.3 7.1e-16 58.1 0.1 5.3 6 ENSP00000369040 pep:known chromosome:NCBI36:2:27659401:27699 8.2e-34 114.0 17.3 7.1e-16 58.1 0.1 5.3 6 ENSP00000347648 pep:known chromosome:NCBI36:2:27659397:27699 Domain annotation for each sequence (and alignments): >> ENSP00000217130 pep:known chromosome:NCBI36:20:62058499:62140382:-1 gene:ENSG00000196700 transcript:ENST00000217130 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.6 0.1 7.2e-18 8.3e-14 3 52 .. 80 130 .. 78 131 .. 0.94 2 ! 51.6 0.1 7.3e-18 8.5e-14 9 53 .] 491 535 .. 484 535 .. 0.93 3 ? -2.2 0.0 1.3 1.5e+04 32 48 .. 544 559 .. 538 560 .. 0.74 4 ! 24.2 0.0 4.3e-09 5.1e-05 16 52 .. 582 619 .. 570 620 .. 0.88 5 ! 51.6 0.1 7.3e-18 8.5e-14 1 53 [] 721 776 .. 721 776 .. 0.97 6 ? -1.1 0.0 0.56 6.5e+03 28 48 .. 787 803 .. 782 805 .. 0.77 Alignments for each domain: == domain 1 score: 51.6 bits; conditional E-value: 7.2e-18 0052292 3 elerpglptlsleeqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e++ + ++lsl+++Wk+e+k+++rv+CP+ gc++++++++Glk+H+++Cq ENSP00000217130 80 ENQALRDIPLSLMNDWKDEFKAHSRVKCPNsGCWLEFPSIYGLKYHYQRCQ 130 677889999*****************************************8 PP == domain 2 score: 51.6 bits; conditional E-value: 7.3e-18 0052292 9 lptlsleeqWkleikekgrvvCPtgcavvrktvlGlkkHlelCqk 53 +++ +eeqW+++i+e+g++vCPt+++v+rkt++GlkkH+e+Cqk ENSP00000217130 491 PAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQK 535 568899*************************************96 PP == domain 3 score: -2.2 bits; conditional E-value: 1.3 0052292 32 tgcavvrktvlGlkkHl 48 + c +k+ Gl +H ENSP00000217130 544 H-CRKQFKSKAGLNYHT 559 3.556789999**9995 PP == domain 4 score: 24.2 bits; conditional E-value: 4.3e-09 0052292 16 eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e+ ++ +k++gr+ CP+ gc + +++++G+++H+ +C ENSP00000217130 582 ERLRKVLKQMGRLRCPQeGCGAAFSSLMGYQYHQRRCG 619 55567899*****************************7 PP == domain 5 score: 51.6 bits; conditional E-value: 7.3e-18 0052292 1 klelerpglptlsle..eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCqk 53 +l+++rpglptl+++ e Wk+e+kekg+v+CP+ +c++++++v+Glk+Hl+ C+k ENSP00000217130 721 RLNYTRPGLPTLNPQllEAWKNEVKEKGHVNCPNdCCEAIYSSVSGLKAHLASCSK 776 689***********999*************************************85 PP == domain 6 score: -1.1 bits; conditional E-value: 0.56 0052292 28 vvCPtgcavvrktvlGlkkHl 48 + CP+ ++++ +G+k+H+ ENSP00000217130 787 LLCPK----EFSSESGVKYHI 803 56775....688999****96 PP >> ENSP00000358904 pep:known chromosome:NCBI36:20:62058499:62071662:-1 gene:ENSG00000196700 transcript:ENST00000369888 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.6 0.1 7.2e-18 8.3e-14 3 52 .. 80 130 .. 78 131 .. 0.94 2 ! 51.6 0.1 7.3e-18 8.5e-14 9 53 .] 491 535 .. 484 535 .. 0.93 3 ? -2.2 0.0 1.3 1.5e+04 32 48 .. 544 559 .. 538 560 .. 0.74 4 ! 24.2 0.0 4.3e-09 5.1e-05 16 52 .. 582 619 .. 570 620 .. 0.88 5 ! 51.6 0.1 7.3e-18 8.5e-14 1 53 [] 721 776 .. 721 776 .. 0.97 6 ? -1.1 0.0 0.56 6.5e+03 28 48 .. 787 803 .. 782 805 .. 0.77 Alignments for each domain: == domain 1 score: 51.6 bits; conditional E-value: 7.2e-18 0052292 3 elerpglptlsleeqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e++ + ++lsl+++Wk+e+k+++rv+CP+ gc++++++++Glk+H+++Cq ENSP00000358904 80 ENQALRDIPLSLMNDWKDEFKAHSRVKCPNsGCWLEFPSIYGLKYHYQRCQ 130 677889999*****************************************8 PP == domain 2 score: 51.6 bits; conditional E-value: 7.3e-18 0052292 9 lptlsleeqWkleikekgrvvCPtgcavvrktvlGlkkHlelCqk 53 +++ +eeqW+++i+e+g++vCPt+++v+rkt++GlkkH+e+Cqk ENSP00000358904 491 PAPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQK 535 568899*************************************96 PP == domain 3 score: -2.2 bits; conditional E-value: 1.3 0052292 32 tgcavvrktvlGlkkHl 48 + c +k+ Gl +H ENSP00000358904 544 H-CRKQFKSKAGLNYHT 559 3.556789999**9995 PP == domain 4 score: 24.2 bits; conditional E-value: 4.3e-09 0052292 16 eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e+ ++ +k++gr+ CP+ gc + +++++G+++H+ +C ENSP00000358904 582 ERLRKVLKQMGRLRCPQeGCGAAFSSLMGYQYHQRRCG 619 55567899*****************************7 PP == domain 5 score: 51.6 bits; conditional E-value: 7.3e-18 0052292 1 klelerpglptlsle..eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCqk 53 +l+++rpglptl+++ e Wk+e+kekg+v+CP+ +c++++++v+Glk+Hl+ C+k ENSP00000358904 721 RLNYTRPGLPTLNPQllEAWKNEVKEKGHVNCPNdCCEAIYSSVSGLKAHLASCSK 776 689***********999*************************************85 PP == domain 6 score: -1.1 bits; conditional E-value: 0.56 0052292 28 vvCPtgcavvrktvlGlkkHl 48 + CP+ ++++ +G+k+H+ ENSP00000358904 787 LLCPK----EFSSESGVKYHI 803 56775....688999****96 PP >> ENSP00000369040 pep:known chromosome:NCBI36:2:27659401:27699465:1 gene:ENSG00000198522 transcript:ENST00000379717 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 0.1 6.1e-20 7.1e-16 1 53 [] 141 193 .. 141 193 .. 0.97 2 ? -0.2 0.1 0.28 3.3e+03 34 48 .. 201 215 .. 195 217 .. 0.75 3 ! 12.5 0.0 2.4e-05 0.28 16 52 .. 238 275 .. 227 276 .. 0.87 4 ? -1.6 0.1 0.85 9.9e+03 29 48 .. 287 305 .. 281 307 .. 0.68 5 ! 52.1 0.2 5e-18 5.8e-14 1 52 [. 376 430 .. 376 431 .. 0.97 6 ? -1.7 0.0 0.85 1e+04 35 49 .. 445 459 .. 437 461 .. 0.76 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 6.1e-20 0052292 1 klelerpglptlsleeqWkleikekgrvvCPtgcavvrktvlGlkkHlelCqk 53 ++++e+p ++++sleeqW+lei++kg+v+CPt++av rkt++GlkkH+e+C++ ENSP00000369040 141 RIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ 193 68999**********************************************86 PP == domain 2 score: -0.2 bits; conditional E-value: 0.28 0052292 34 cavvrktvlGlkkHl 48 c ++ G+k+H+ ENSP00000369040 201 CGKQLRSLAGMKYHV 215 4456689*******6 PP == domain 3 score: 12.5 bits; conditional E-value: 2.4e-05 0052292 16 eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e+ ++ +k+ g++ C c +++++G+ +H+ C ENSP00000369040 238 ERLRTVLKRLGKLRCMReSCSSSFTSIMGYLYHVRKCG 275 5667789999******99*******************7 PP == domain 4 score: -1.6 bits; conditional E-value: 0.85 0052292 29 vCPtgcavvrktvlGlkkHl 48 +C ++ + + Gl +Hl ENSP00000369040 287 KCHHCG-KPYRSKAGLAYHL 305 565544.4577889999998 PP == domain 5 score: 52.1 bits; conditional E-value: 5e-18 0052292 1 klelerpglptlsle..eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 kl+++rpglpt+s+e ++Wk++ik+++r++CP+ gc++v+++v+Glk+Hl+ C+ ENSP00000369040 376 KLKYTRPGLPTFSQEvlHKWKTDIKKYHRIQCPNqGCEAVYSSVSGLKAHLGSCT 430 689************999************************************7 PP == domain 6 score: -1.7 bits; conditional E-value: 0.85 0052292 35 avvrktvlGlkkHle 49 ++ + +G+k+H++ ENSP00000369040 445 QKEFVSESGVKYHIN 459 45677889*****86 PP >> ENSP00000347648 pep:known chromosome:NCBI36:2:27659397:27699460:1 gene:ENSG00000198522 transcript:ENST00000355467 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.1 0.1 6.1e-20 7.1e-16 1 53 [] 142 194 .. 142 194 .. 0.97 2 ? -0.2 0.1 0.28 3.3e+03 34 48 .. 202 216 .. 196 218 .. 0.75 3 ! 12.5 0.0 2.4e-05 0.28 16 52 .. 239 276 .. 228 277 .. 0.87 4 ? -1.6 0.1 0.85 9.9e+03 29 48 .. 288 306 .. 282 308 .. 0.68 5 ! 52.1 0.2 5e-18 5.8e-14 1 52 [. 377 431 .. 377 432 .. 0.97 6 ? -1.7 0.0 0.86 1e+04 35 49 .. 446 460 .. 438 462 .. 0.76 Alignments for each domain: == domain 1 score: 58.1 bits; conditional E-value: 6.1e-20 0052292 1 klelerpglptlsleeqWkleikekgrvvCPtgcavvrktvlGlkkHlelCqk 53 ++++e+p ++++sleeqW+lei++kg+v+CPt++av rkt++GlkkH+e+C++ ENSP00000347648 142 RIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ 194 68999**********************************************86 PP == domain 2 score: -0.2 bits; conditional E-value: 0.28 0052292 34 cavvrktvlGlkkHl 48 c ++ G+k+H+ ENSP00000347648 202 CGKQLRSLAGMKYHV 216 4456689*******6 PP == domain 3 score: 12.5 bits; conditional E-value: 2.4e-05 0052292 16 eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 e+ ++ +k+ g++ C c +++++G+ +H+ C ENSP00000347648 239 ERLRTVLKRLGKLRCMReSCSSSFTSIMGYLYHVRKCG 276 5667789999******99*******************7 PP == domain 4 score: -1.6 bits; conditional E-value: 0.85 0052292 29 vCPtgcavvrktvlGlkkHl 48 +C ++ + + Gl +Hl ENSP00000347648 288 KCHHCG-KPYRSKAGLAYHL 306 565544.4577889999998 PP == domain 5 score: 52.1 bits; conditional E-value: 5e-18 0052292 1 klelerpglptlsle..eqWkleikekgrvvCPt.gcavvrktvlGlkkHlelCq 52 kl+++rpglpt+s+e ++Wk++ik+++r++CP+ gc++v+++v+Glk+Hl+ C+ ENSP00000347648 377 KLKYTRPGLPTFSQEvlHKWKTDIKKYHRIQCPNqGCEAVYSSVSGLKAHLGSCT 431 689************999************************************7 PP == domain 6 score: -1.7 bits; conditional E-value: 0.86 0052292 35 avvrktvlGlkkHle 49 ++ + +G+k+H++ ENSP00000347648 446 QKEFVSESGVKYHIN 460 45677889*****86 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (53 nodes) Target sequences: 46591 (23540008 residues) Passed MSV filter: 1841 (0.0395141); expected 931.8 (0.02) Passed bias filter: 1841 (0.0395141); expected 931.8 (0.02) Passed Vit filter: 334 (0.00716877); expected 46.6 (0.001) Passed Fwd filter: 57 (0.00122341); expected 0.5 (1e-05) Initial search space (Z): 46591 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.88u 0.05s 00:00:00.93 Elapsed: 00:00:00.28 # Mc/sec: 4455.79 //