# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: hmmermodlib/0050630.hmm # target sequence database: /u/praktikum/Downloads/Homo_sapiens.fasta # sequence reporting threshold: E-value <= 0.0001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 0050630 [M=35] Accession: 0050630 Description: C2H2 and C2HC zinc fingers Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-08 32.4 3.0 6e-08 32.4 2.1 3.1 2 ENSP00000345917 pep:known chromosome:NCBI36:4:4320329:434279 Domain annotation for each sequence (and alignments): >> ENSP00000345917 pep:known chromosome:NCBI36:4:4320329:4342794:-1 gene:ENSG00000145220 transcript:ENST00000343470 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.4 2.1 1.3e-12 6e-08 8 34 .. 1 27 [. 1 28 [. 0.97 2 ? -0.4 1.0 0.08 3.7e+03 12 30 .. 32 50 .. 29 54 .. 0.84 Alignments for each domain: == domain 1 score: 32.4 bits; conditional E-value: 1.3e-12 0050630 8 mvlFtCeaCgetlkkpkvekHlslcrg 34 mv+FtC+aCge++kk +vekH+s cr+ ENSP00000345917 1 MVFFTCNACGESVKKIQVEKHVSVCRN 27 9************************97 PP == domain 2 score: -0.4 bits; conditional E-value: 0.08 0050630 12 tCeaCgetlkkpkvekHls 30 +C +Cg+ ++ ++H+ ENSP00000345917 32 SCIDCGKDFWGDDYKNHVK 50 799****999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 46591 (23540008 residues) Passed MSV filter: 4079 (0.0875491); expected 931.8 (0.02) Passed bias filter: 4079 (0.0875491); expected 931.8 (0.02) Passed Vit filter: 1651 (0.035436); expected 46.6 (0.001) Passed Fwd filter: 1077 (0.0231161); expected 0.5 (1e-05) Initial search space (Z): 46591 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 9.79u 0.06s 00:00:09.84 Elapsed: 00:00:02.56 # Mc/sec: 321.84 //