# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: hmmermodlib/0050623.hmm # target sequence database: /u/praktikum/Downloads/Homo_sapiens.fasta # sequence reporting threshold: E-value <= 0.0001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 0050623 [M=24] Accession: 0050623 Description: C2H2 and C2HC zinc fingers Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-08 33.7 0.8 1e-08 33.7 0.5 2.9 3 ENSP00000381517 pep:known chromosome:NCBI36:21:42280009:4230 1.3e-08 33.3 0.8 1.3e-08 33.3 0.5 4.8 5 ENSP00000308759 pep:known chromosome:NCBI36:21:42280009:4230 1.3e-08 33.3 0.8 1.3e-08 33.3 0.5 4.8 5 ENSP00000381512 pep:known chromosome:NCBI36:21:42281815:4230 1.3e-08 33.3 0.8 1.3e-08 33.3 0.5 4.8 5 ENSP00000381523 pep:known chromosome:NCBI36:21:42280009:4230 Domain annotation for each sequence (and alignments): >> ENSP00000381517 pep:known chromosome:NCBI36:21:42280009:42303535:-1 gene:ENSG00000173276 transcript:ENST00000398505 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 0.5 8.8e-13 1e-08 2 24 .] 548 570 .. 547 570 .. 0.96 2 ? -4.1 0.0 4 4.7e+04 2 11 .. 737 746 .. 737 748 .. 0.76 3 ? -3.3 0.0 4 4.7e+04 3 14 .. 844 855 .. 843 862 .. 0.70 Alignments for each domain: == domain 1 score: 33.7 bits; conditional E-value: 8.8e-13 0050623 2 vcpycglrfsspalkkeheakce 24 vcpyc+lrf+sp+lk+ehe+kce ENSP00000381517 548 VCPYCSLRFFSPELKQEHESKCE 570 9*********************7 PP == domain 2 score: -4.1 bits; conditional E-value: 4 0050623 2 vcpycglrfs 11 +c c+ f ENSP00000381517 737 ICHVCNKAFR 746 6999988776 PP == domain 3 score: -3.3 bits; conditional E-value: 4 0050623 3 cpycglrfsspa 14 c c f + ENSP00000381517 844 CKLCHRTFKTAF 855 899998888765 PP >> ENSP00000308759 pep:known chromosome:NCBI36:21:42280009:42303535:-1 gene:ENSG00000173276 transcript:ENST00000310826 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.2 1 1.2e+04 2 13 .. 576 587 .. 575 594 .. 0.83 2 ? -0.4 0.1 0.44 5.1e+03 2 10 .. 671 679 .. 670 689 .. 0.74 3 ? -0.7 0.1 0.56 6.5e+03 3 23 .. 724 744 .. 722 745 .. 0.90 4 ! 33.3 0.5 1.1e-12 1.3e-08 2 24 .] 749 771 .. 748 771 .. 0.96 5 ? -3.6 0.0 4 4.7e+04 3 14 .. 1045 1056 .. 1044 1063 .. 0.70 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 1 0050623 2 vcpycglrfssp 13 c c rf++ ENSP00000308759 576 ACDICHKRFHTN 587 699******985 PP == domain 2 score: -0.4 bits; conditional E-value: 0.44 0050623 2 vcpycglrf 10 +c ycg + ENSP00000308759 671 ICTYCGKAY 679 8****9654 PP == domain 3 score: -0.7 bits; conditional E-value: 0.56 0050623 3 cpycglrfsspalkkeheakc 23 c c+ ++ss + he c ENSP00000308759 724 CRLCNAKLSSLLEQGSHERLC 744 999*******99999999998 PP == domain 4 score: 33.3 bits; conditional E-value: 1.1e-12 0050623 2 vcpycglrfsspalkkeheakce 24 vcpyc+lrf+sp+lk+ehe+kce ENSP00000308759 749 VCPYCSLRFFSPELKQEHESKCE 771 9*********************7 PP == domain 5 score: -3.6 bits; conditional E-value: 4 0050623 3 cpycglrfsspa 14 c c f + ENSP00000308759 1045 CKLCHRTFKTAF 1056 899998888765 PP >> ENSP00000381512 pep:known chromosome:NCBI36:21:42281815:42303544:-1 gene:ENSG00000173276 transcript:ENST00000398499 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.2 1 1.2e+04 2 13 .. 576 587 .. 575 594 .. 0.83 2 ? -0.4 0.1 0.44 5.1e+03 2 10 .. 671 679 .. 670 689 .. 0.74 3 ? -0.7 0.1 0.56 6.5e+03 3 23 .. 724 744 .. 722 745 .. 0.90 4 ! 33.3 0.5 1.1e-12 1.3e-08 2 24 .] 749 771 .. 748 771 .. 0.96 5 ? -3.6 0.0 4 4.7e+04 3 14 .. 1045 1056 .. 1044 1063 .. 0.70 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 1 0050623 2 vcpycglrfssp 13 c c rf++ ENSP00000381512 576 ACDICHKRFHTN 587 699******985 PP == domain 2 score: -0.4 bits; conditional E-value: 0.44 0050623 2 vcpycglrf 10 +c ycg + ENSP00000381512 671 ICTYCGKAY 679 8****9654 PP == domain 3 score: -0.7 bits; conditional E-value: 0.56 0050623 3 cpycglrfsspalkkeheakc 23 c c+ ++ss + he c ENSP00000381512 724 CRLCNAKLSSLLEQGSHERLC 744 999*******99999999998 PP == domain 4 score: 33.3 bits; conditional E-value: 1.1e-12 0050623 2 vcpycglrfsspalkkeheakce 24 vcpyc+lrf+sp+lk+ehe+kce ENSP00000381512 749 VCPYCSLRFFSPELKQEHESKCE 771 9*********************7 PP == domain 5 score: -3.6 bits; conditional E-value: 4 0050623 3 cpycglrfsspa 14 c c f + ENSP00000381512 1045 CKLCHRTFKTAF 1056 899998888765 PP >> ENSP00000381523 pep:known chromosome:NCBI36:21:42280009:42303519:-1 gene:ENSG00000173276 transcript:ENST00000398511 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.2 1 1.2e+04 2 13 .. 576 587 .. 575 594 .. 0.83 2 ? -0.4 0.1 0.44 5.1e+03 2 10 .. 671 679 .. 670 689 .. 0.74 3 ? -0.7 0.1 0.56 6.5e+03 3 23 .. 724 744 .. 722 745 .. 0.90 4 ! 33.3 0.5 1.1e-12 1.3e-08 2 24 .] 749 771 .. 748 771 .. 0.96 5 ? -3.6 0.0 4 4.7e+04 3 14 .. 1045 1056 .. 1044 1063 .. 0.70 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 1 0050623 2 vcpycglrfssp 13 c c rf++ ENSP00000381523 576 ACDICHKRFHTN 587 699******985 PP == domain 2 score: -0.4 bits; conditional E-value: 0.44 0050623 2 vcpycglrf 10 +c ycg + ENSP00000381523 671 ICTYCGKAY 679 8****9654 PP == domain 3 score: -0.7 bits; conditional E-value: 0.56 0050623 3 cpycglrfsspalkkeheakc 23 c c+ ++ss + he c ENSP00000381523 724 CRLCNAKLSSLLEQGSHERLC 744 999*******99999999998 PP == domain 4 score: 33.3 bits; conditional E-value: 1.1e-12 0050623 2 vcpycglrfsspalkkeheakce 24 vcpyc+lrf+sp+lk+ehe+kce ENSP00000381523 749 VCPYCSLRFFSPELKQEHESKCE 771 9*********************7 PP == domain 5 score: -3.6 bits; conditional E-value: 4 0050623 3 cpycglrfsspa 14 c c f + ENSP00000381523 1045 CKLCHRTFKTAF 1056 899998888765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (24 nodes) Target sequences: 46591 (23540008 residues) Passed MSV filter: 2971 (0.0637677); expected 931.8 (0.02) Passed bias filter: 2971 (0.0637677); expected 931.8 (0.02) Passed Vit filter: 966 (0.0207336); expected 46.6 (0.001) Passed Fwd filter: 351 (0.00753364); expected 0.5 (1e-05) Initial search space (Z): 46591 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.85u 0.05s 00:00:00.90 Elapsed: 00:00:00.28 # Mc/sec: 2017.71 //