# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: hmmermodlib/0050596.hmm # target sequence database: /u/praktikum/Downloads/Homo_sapiens.fasta # sequence reporting threshold: E-value <= 0.0001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 0050596 [M=121] Accession: 0050596 Description: C2H2 and C2HC zinc fingers Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-63 210.8 23.9 4.3e-39 134.2 3.0 4.2 4 ENSP00000355043 pep:known chromosome:NCBI36:7:111633879:1117 8.3e-63 210.6 23.9 4.6e-39 134.1 3.0 4.2 4 ENSP00000354501 pep:known chromosome:NCBI36:7:111633879:1117 2.4e-36 125.4 1.8 4.5e-36 124.5 1.2 1.4 1 ENSP00000331879 pep:known chromosome:NCBI36:11:20365679:2048 1.2e-28 100.6 0.6 2.4e-28 99.6 0.4 1.4 1 ENSP00000329586 pep:known chromosome:NCBI36:11:20365679:2048 8.3e-13 49.5 13.4 2e-09 38.6 0.2 4.6 5 ENSP00000310042 pep:known chromosome:NCBI36:5:16504629:16518 Domain annotation for each sequence (and alignments): >> ENSP00000355043 pep:known chromosome:NCBI36:7:111633879:111770320:1 gene:ENSG00000198839 transcript:ENST00000361946 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 1.6e-05 0.14 13 65 .. 43 86 .. 35 136 .. 0.76 2 ! 15.2 0.2 4e-06 0.037 11 43 .. 156 189 .. 145 201 .. 0.76 3 ! 59.2 2.3 8.9e-20 8.3e-16 4 77 .. 200 268 .. 197 274 .. 0.93 4 ! 134.2 3.0 4.6e-43 4.3e-39 2 119 .. 276 415 .. 275 417 .. 0.97 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.6e-05 0050596 13 leptvCLfcdktfs..dveellehmkkkhgFdlleirlklgldfYdlikLiNyir 65 ++ C+fc+++f+ +++ll+hm +h+ + +++l + r ENSP00000355043 43 SPSVPCIFCEEHFPvaEQDKLLKHMIIEHKIVIADVKLVADFQ-----------R 86 45699*******98446789**********9998888755433...........3 PP == domain 2 score: 15.2 bits; conditional E-value: 4e-06 0050596 11 eeleptvCLfc.dktfsdveellehmkkkhgFdl 43 + + + vC+fc ++ + +++++l+hm +h F++ ENSP00000355043 156 DTNFHGVCMFCnEEFLGNRSVILNHMAREHAFNI 189 3334489****557789***************98 PP == domain 3 score: 59.2 bits; conditional E-value: 8.9e-20 0050596 4 edwddleeeleptvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcd 77 e ++ l+++l++++CL+c+ktf+d ++l++hm+kk++ +++++++++Yd++++iNy++l++++ e++l+d ENSP00000355043 200 EFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQH-----RKINPKNREYDRFYVINYLELGKSWEEVQLED 268 6778999******************************.....**************************999875 PP == domain 4 score: 134.2 bits; conditional E-value: 4.6e-43 0050596 2 ddedwddleeeleptvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcdelal.............. 81 +++dw+d+ee++ ++vCLfc+k+ +++e+l+ hm+++h+Fdll+i+ +lgl+fY+++kL+N+ir++v++++c+ c+ +++ ENSP00000355043 276 QEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKskadlrthmeetkh 369 79******************************************************************************************** PP 0050596 82 ........lwdddeylkPvledDalLlllvdlleddeelelsavll 119 +wd+ ey++P++e+D+lL++l+d+++d +++e++++++ ENSP00000355043 370 tsllpdrkTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEQNENVP 415 *************************************999988776 PP >> ENSP00000354501 pep:known chromosome:NCBI36:7:111633879:111770320:1 gene:ENSG00000198839 transcript:ENST00000361822 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 1.6e-05 0.15 13 53 .. 55 97 .. 47 148 .. 0.76 2 ! 15.2 0.2 4.1e-06 0.039 11 43 .. 168 201 .. 157 213 .. 0.76 3 ! 59.2 2.3 9.3e-20 8.6e-16 4 77 .. 212 280 .. 209 286 .. 0.93 4 ! 134.1 3.0 4.9e-43 4.6e-39 2 119 .. 288 427 .. 287 429 .. 0.97 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.6e-05 0050596 13 leptvCLfcdktfs..dveellehmkkkhgFdlleirlklgld 53 ++ C+fc+++f+ +++ll+hm +h+ + +++l + ENSP00000354501 55 SPSVPCIFCEEHFPvaEQDKLLKHMIIEHKIVIADVKLVADFQ 97 45699*******98446789**********9998888755433 PP == domain 2 score: 15.2 bits; conditional E-value: 4.1e-06 0050596 11 eeleptvCLfc.dktfsdveellehmkkkhgFdl 43 + + + vC+fc ++ + +++++l+hm +h F++ ENSP00000354501 168 DTNFHGVCMFCnEEFLGNRSVILNHMAREHAFNI 201 3334489****557789***************98 PP == domain 3 score: 59.2 bits; conditional E-value: 9.3e-20 0050596 4 edwddleeeleptvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcd 77 e ++ l+++l++++CL+c+ktf+d ++l++hm+kk++ +++++++++Yd++++iNy++l++++ e++l+d ENSP00000354501 212 EFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQH-----RKINPKNREYDRFYVINYLELGKSWEEVQLED 280 6778999******************************.....**************************999875 PP == domain 4 score: 134.1 bits; conditional E-value: 4.9e-43 0050596 2 ddedwddleeeleptvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcdelal.............. 81 +++dw+d+ee++ ++vCLfc+k+ +++e+l+ hm+++h+Fdll+i+ +lgl+fY+++kL+N+ir++v++++c+ c+ +++ ENSP00000354501 288 QEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCYGCHVKFKskadlrthmeetkh 381 79******************************************************************************************** PP 0050596 82 ........lwdddeylkPvledDalLlllvdlleddeelelsavll 119 +wd+ ey++P++e+D+lL++l+d+++d +++e++++++ ENSP00000354501 382 tsllpdrkTWDQLEYYFPTYENDTLLCTLSDSESDLTAQEQNENVP 427 *************************************999988776 PP >> ENSP00000331879 pep:known chromosome:NCBI36:11:20365679:20487349:1 gene:ENSG00000185238 transcript:ENST00000331079 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 124.5 1.2 4.8e-40 4.5e-36 2 117 .. 34 149 .. 28 152 .. 0.92 Alignments for each domain: == domain 1 score: 124.5 bits; conditional E-value: 4.8e-40 0050596 2 ddedwddleeeleptvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcdelallwdddeylkPvled 95 +ded+ dl ++ ++t CLfc+++f+++ee+++h+k++h+F++ ++++k+gl+fY++ikLiN+irlk+ + e++++++++++w+++eylkPvled ENSP00000331879 34 EDEDDADLPHGKQQTPCLFCNRLFTSAEETFSHCKSEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVEYMNSIYNPVPWEKEEYLKPVLED 127 46666666667777******************************************************************************** PP 0050596 96 DalLlllvdlleddeelelsav 117 D lL+++v++l++++++++s+ ENSP00000331879 128 DLLLQFDVEDLYEPVSVPFSYP 149 ***************9998875 PP >> ENSP00000329586 pep:known chromosome:NCBI36:11:20365679:20487349:1 gene:ENSG00000185238 transcript:ENST00000330796 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 99.6 0.4 2.5e-32 2.4e-28 23 117 .. 72 166 .. 62 169 .. 0.96 Alignments for each domain: == domain 1 score: 99.6 bits; conditional E-value: 2.5e-32 0050596 23 ktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllcdelallwdddeylkPvledDalLlllvdlleddeelelsa 116 ++f+++ee+++h+k++h+F++ ++++k+gl+fY++ikLiN+irlk+ + e++++++++++w+++eylkPvledD lL+++v++l++++++++s+ ENSP00000329586 72 RLFTSAEETFSHCKSEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVEYMNSIYNPVPWEKEEYLKPVLEDDLLLQFDVEDLYEPVSVPFSY 165 5799************************************************************************************999887 PP 0050596 117 v 117 ENSP00000329586 166 P 166 5 PP >> ENSP00000310042 pep:known chromosome:NCBI36:5:16504629:16518898:-1 gene:ENSG00000173545 transcript:ENST00000308683 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.4 0.0 0.0047 44 16 40 .. 4 28 .. 1 42 [. 0.83 2 ! 7.9 0.0 0.00076 7.1 9 46 .. 60 97 .. 55 106 .. 0.83 3 ? -2.2 0.6 1 9.4e+03 3 14 .. 207 218 .. 197 231 .. 0.69 4 ! 38.6 0.2 2.2e-13 2e-09 5 76 .. 236 307 .. 222 308 .. 0.83 5 ! 6.7 0.3 0.0018 16 17 44 .. 304 334 .. 300 350 .. 0.80 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0047 0050596 16 tvCLfcdktfsdveellehmkkkhg 40 ++C+ c f+d++ h k+ ++ ENSP00000310042 4 YTCITCRVAFRDADMQRAHYKTDWH 28 79*******************9876 PP == domain 2 score: 7.9 bits; conditional E-value: 0.00076 0050596 9 leeeleptvCLfcdktfsdveellehmkkkhgFdllei 46 e++ t C c+k f ++++ +h+k++ ++ l ++ ENSP00000310042 60 EESKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKK 97 34555559************************988765 PP == domain 3 score: -2.2 bits; conditional E-value: 1 0050596 3 dedwddleeele 14 +dw+d+++++e ENSP00000310042 207 GDDWEDIDSDEE 218 466666666554 PP == domain 4 score: 38.6 bits; conditional E-value: 2.2e-13 0050596 5 dwddleeelep.........tvCLfcdktfsdveellehmkkkhgFdlleirlklgldfYdlikLiNyirlkvllgecllc 76 + ++ e + t CLfc++++s++ +++ hm k h+F++++i++ ++ Li y+ kv g+++l+ ENSP00000310042 236 EEEEAE----EgpplgaipiTDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKG-----LIKYLGEKVGVGKICLW 307 222222....1334578889***********************************9999.....**********9999865 PP == domain 5 score: 6.7 bits; conditional E-value: 0.0018 0050596 17 vCLfc...dktfsdveellehmkkkhgFdll 44 +CL+c +k+f ++e++ hm++k ++ l ENSP00000310042 304 ICLWCnekGKSFYSTEAVQAHMNDKSHCKLF 334 7****555588999************98775 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (121 nodes) Target sequences: 46591 (23540008 residues) Passed MSV filter: 3165 (0.0679316); expected 931.8 (0.02) Passed bias filter: 3165 (0.0679316); expected 931.8 (0.02) Passed Vit filter: 1293 (0.0277521); expected 46.6 (0.001) Passed Fwd filter: 752 (0.0161405); expected 0.5 (1e-05) Initial search space (Z): 46591 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 11.06u 0.06s 00:00:11.12 Elapsed: 00:00:02.86 # Mc/sec: 995.92 //