# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: hmmermodlib/0049956.hmm # target sequence database: /u/praktikum/Downloads/Homo_sapiens.fasta # sequence reporting threshold: E-value <= 0.0001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 0049956 [M=30] Accession: 0049956 Description: C2H2 and C2HC zinc fingers Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-09 35.9 0.4 4.6e-09 35.9 0.3 5.1 6 ENSP00000370532 pep:known chromosome:NCBI36:13:26896681:2690 Domain annotation for each sequence (and alignments): >> ENSP00000370532 pep:known chromosome:NCBI36:13:26896681:26907823:1 gene:ENSG00000122034 transcript:ENST00000381140 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 3.0 0.1 0.0098 4.6e+02 2 29 .. 157 183 .. 156 184 .. 0.89 2 ? -2.0 0.2 0.43 2e+04 2 15 .. 189 201 .. 188 215 .. 0.63 3 ? -2.5 0.1 0.67 3.1e+04 3 24 .. 220 240 .. 219 243 .. 0.61 4 ! 35.9 0.3 9.8e-14 4.6e-09 1 30 [] 245 272 .. 245 272 .. 0.97 5 ? -2.6 0.1 0.71 3.3e+04 18 28 .. 286 296 .. 275 297 .. 0.50 6 ? -1.0 0.1 0.21 9.8e+03 4 28 .. 305 328 .. 303 330 .. 0.65 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.0098 0049956 2 ylCekdsgCsfvgktWteylkhvkelhk 29 ++C + gC+ + +t +++ kh+++ h+ ENSP00000370532 157 FVCAAN-GCDQKFNTKSNLKKHFERKHE 183 678887.9***************99986 PP == domain 2 score: -2.0 bits; conditional E-value: 0.43 0049956 2 ylCekdsgCsfvgk 15 y+C+ + +C+ + k ENSP00000370532 189 YICSFE-DCKKTFK 201 777776.6654444 PP == domain 3 score: -2.5 bits; conditional E-value: 0.67 0049956 3 lCekdsgCsfvgktWteylkhv 24 C ++ gC+ + + +++ +h ENSP00000370532 220 KCTQE-GCGKHFASPSKLKRHA 240 57777.8876655555555555 PP == domain 4 score: 35.9 bits; conditional E-value: 9.8e-14 0049956 1 GylCekdsgCsfvgktWteylkhvkelhke 30 Gy+C+k gCsfv+ktWte+lkhv+e+hke ENSP00000370532 245 GYVCQK--GCSFVAKTWTELLKHVRETHKE 272 9*****..9*******************86 PP == domain 5 score: -2.6 bits; conditional E-value: 0.71 0049956 18 teylkhvkelh 28 +ylk + ++h ENSP00000370532 286 KDYLKQHMKTH 296 36777655555 PP == domain 6 score: -1.0 bits; conditional E-value: 0.21 0049956 4 CekdsgCsfvgktWteylkhvkelh 28 C+++ gC+ + t ++ h+ h ENSP00000370532 305 CPRE-GCGRTYTTVFNLQSHILSFH 328 7777.88777666666666766666 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (30 nodes) Target sequences: 46591 (23540008 residues) Passed MSV filter: 2388 (0.0512545); expected 931.8 (0.02) Passed bias filter: 2388 (0.0512545); expected 931.8 (0.02) Passed Vit filter: 476 (0.0102166); expected 46.6 (0.001) Passed Fwd filter: 100 (0.00214634); expected 0.5 (1e-05) Initial search space (Z): 46591 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.11u 0.05s 00:00:01.16 Elapsed: 00:00:00.46 # Mc/sec: 1535.22 //