BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1097168918-24539-578524554.BLASTQ4 Query= (201 letters) Database: PDB protein database 18,695 sequences; 4,163,319 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1097168918-24539-578524554.BLASTQ4
Query= (201 letters)
Database: PDB protein database 18,695 sequences; 4,163,319 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|51247563|pdb|1T5B|B Chain B, Structural Genomics, A Prot... 373 e-104 gi|50513747|pdb|1TIK|A Chain A, Crystal Structure Of Acyl C... 334 5e-93 gi|18655885|pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Qu... 37 0.002 gi|15988501|pdb|1H69|D Chain D, Crystal Structure Of Human ... 37 0.002 gi|7766990|pdb|1QBG|D Chain D, Crystal Structure Of Human D... 37 0.002 gi|5822494|pdb|2QR2|B Chain B, Human Quinone Reductase Type... 36 0.004 gi|52696278|pdb|1X77|B Chain B, Crystal Struture Of A Nad(P... 32 0.054 gi|47169192|pdb|1SQS|B Chain B, Crystal Structure Of The Co... 32 0.092 gi|50513674|pdb|1T0I|B Chain B, Ylr011wp, A Saccharomyces C... 29 0.46 gi|34810966|pdb|1NNI|1 Chain 1, Azobenzene Reductase From B... 26 3.9 gi|6730020|pdb|2JDX|A Chain A, Crystal Structure Of Human L... 25 6.6 Alignments
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|51247563|pdb|1T5B|B Chain B, Structural Genomics, A Prot... 373 e-104 gi|50513747|pdb|1TIK|A Chain A, Crystal Structure Of Acyl C... 334 5e-93 gi|18655885|pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Qu... 37 0.002 gi|15988501|pdb|1H69|D Chain D, Crystal Structure Of Human ... 37 0.002 gi|7766990|pdb|1QBG|D Chain D, Crystal Structure Of Human D... 37 0.002 gi|5822494|pdb|2QR2|B Chain B, Human Quinone Reductase Type... 36 0.004 gi|52696278|pdb|1X77|B Chain B, Crystal Struture Of A Nad(P... 32 0.054 gi|47169192|pdb|1SQS|B Chain B, Crystal Structure Of The Co... 32 0.092 gi|50513674|pdb|1T0I|B Chain B, Ylr011wp, A Saccharomyces C... 29 0.46 gi|34810966|pdb|1NNI|1 Chain 1, Azobenzene Reductase From B... 26 3.9 gi|6730020|pdb|2JDX|A Chain A, Crystal Structure Of Human L... 25 6.6
>gi|51247563|pdb|1T5B|B Chain B, Structural Genomics, A Protein From Salmonella Typhimurium Similar To E. Coli Acyl Carrier Protein Phosphodiesterase gi|51247562|pdb|1T5B|A Chain A, Structural Genomics, A Protein From Salmonella Typhimurium Similar To E. Coli Acyl Carrier Protein Phosphodiesterase Length = 201 Score = 373 bits (957), Expect = e-104 Identities = 190/201 (94%), Positives = 190/201 (94%) Query: 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMR 60 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMR Sbjct: 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMR 60 Query: 61 PGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFR 120 PGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFR Sbjct: 61 PGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFR 120 Query: 121 YTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIAYG 180 YTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIAYG Sbjct: 121 YTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIAYG 180 Query: 181 PEVXXXXXXXXXXXIDSVVAA 201 PEV IDSVVAA Sbjct: 181 PEVAAKAQADAKAAIDSVVAA 201
>gi|50513747|pdb|1TIK|A Chain A, Crystal Structure Of Acyl Carrier Protein Phosphodiesterase Length = 213 Score = 334 bits (857), Expect = 5e-93 Identities = 163/201 (81%), Positives = 178/201 (88%) Query: 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMR 60 +SKVLVLKSSILAGYSQS QL+DYF+EQWREKH ADEITVRDLAANP+PVLDGELVGA+R Sbjct: 3 LSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALR 62 Query: 61 PGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFR 120 P DAPLTPRQQ+ALALSDELIAELKAHDVIVIAAP YNFNI TQLKNYFDL+ARAG+TFR Sbjct: 63 PSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPXYNFNISTQLKNYFDLVARAGVTFR 122 Query: 121 YTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIAYG 180 YTE GPEGLVTGK+A+V++SRGGIHKD PTDL+ PYL FLGFIGITDV FVFAEGIAYG Sbjct: 123 YTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYG 182 Query: 181 PEVXXXXXXXXXXXIDSVVAA 201 PE IDS+V+A Sbjct: 183 PEXAAKAQSDAKAAIDSIVSA 203
>gi|18655885|pdb|1KBQ|D Chain D, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5- Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7- Dione (Es936) gi|18655884|pdb|1KBQ|C Chain C, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5- Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7- Dione (Es936) gi|18655883|pdb|1KBQ|B Chain B, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5- Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7- Dione (Es936) gi|18655882|pdb|1KBQ|A Chain A, Complex Of Human Nad(P)h Quinone Oxidoreductase With 5- Methoxy-1,2-Dimethyl-3-(4-Nitrophenoxymethyl)indole-4,7- Dione (Es936) gi|18655881|pdb|1KBO|D Chain D, Complex Of Human Recombinant Nad(P)h:quinone Oxide Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3- (Phenoxymethyl)indole-4,7-Dione (Es1340) gi|18655880|pdb|1KBO|C Chain C, Complex Of Human Recombinant Nad(P)h:quinone Oxide Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3- (Phenoxymethyl)indole-4,7-Dione (Es1340) gi|18655879|pdb|1KBO|B Chain B, Complex Of Human Recombinant Nad(P)h:quinone Oxide Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3- (Phenoxymethyl)indole-4,7-Dione (Es1340) gi|18655878|pdb|1KBO|A Chain A, Complex Of Human Recombinant Nad(P)h:quinone Oxide Reductase Type 1 With 5-Methoxy-1,2-Dimethyl-3- (Phenoxymethyl)indole-4,7-Dione (Es1340) gi|15988412|pdb|1GG5|D Chain D, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5 A Resolution gi|15988411|pdb|1GG5|C Chain C, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5 A Resolution gi|15988410|pdb|1GG5|B Chain B, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5 A Resolution gi|15988409|pdb|1GG5|A Chain A, Crystal Structure Of A Complex Of Human Nad[p]h-Quinone Oxidoreductase And A Chemotherapeutic Drug (E09) At 2.5 A Resolution gi|7766995|pdb|1DXO|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|7766994|pdb|1DXO|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|7766993|pdb|1DXO|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|7766992|pdb|1DXO|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|6435670|pdb|1D4A|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase At 1.7 A Resolution gi|6435669|pdb|1D4A|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase At 1.7 A Resolution gi|6435668|pdb|1D4A|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase At 1.7 A Resolution gi|6435667|pdb|1D4A|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase At 1.7 A Resolution Length = 273 Score = 37.4 bits (85), Expect = 0.002 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 76 LSDELIAE---LKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTG 132 LS +++AE L+A D+++ P+ F +P LK +F+ + + Y +G Sbjct: 80 LSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRS 139 Query: 133 KRAVVLSSRGG 143 K+AV+ + GG Sbjct: 140 KKAVLSITTGG 150
>gi|15988501|pdb|1H69|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|15988500|pdb|1H69|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|15988499|pdb|1H69|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|15988498|pdb|1H69|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,3,5,6,Tetramethyl-P-Benzoquinone (Duroquinone) At 2.5 Angstrom Resolution gi|15988497|pdb|1H66|D Chain D, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone gi|15988496|pdb|1H66|C Chain C, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone gi|15988495|pdb|1H66|B Chain B, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone gi|15988494|pdb|1H66|A Chain A, Crystal Structure Of Human Nad[p]h-Quinone Oxidoreductase Co With 2,5-Diaziridinyl-3-Hydroxyl-6-Methyl-1,4-Benzoquinone Length = 273 Score = 37.4 bits (85), Expect = 0.002 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 76 LSDELIAE---LKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTG 132 LS +++AE L+A D+++ P+ F +P LK +F+ + + Y +G Sbjct: 80 LSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRS 139 Query: 133 KRAVVLSSRGG 143 K+AV+ + GG Sbjct: 140 KKAVLSITTGG 150
>gi|7766990|pdb|1QBG|D Chain D, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h Oxidoreductase) gi|7766989|pdb|1QBG|C Chain C, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h Oxidoreductase) gi|7766988|pdb|1QBG|B Chain B, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h Oxidoreductase) gi|7766987|pdb|1QBG|A Chain A, Crystal Structure Of Human Dt-Diaphorase (Nad(P)h Oxidoreductase) Length = 272 Score = 37.4 bits (85), Expect = 0.002 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 76 LSDELIAE---LKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTG 132 LS +++AE L+A D+++ P+ F +P LK +F+ + + Y +G Sbjct: 79 LSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRS 138 Query: 133 KRAVVLSSRGG 143 K+AV+ + GG Sbjct: 139 KKAVLSITTGG 149
>gi|5822494|pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione gi|5822493|pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione gi|5822325|pdb|1QR2|B Chain B, Human Quinone Reductase Type 2 gi|5822324|pdb|1QR2|A Chain A, Human Quinone Reductase Type 2 Length = 230 Score = 36.2 bits (82), Expect = 0.004 Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 +++ D+++ P+Y F++P LK + D + G F GL+ GK A++ + G Sbjct: 90 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTG 149 Query: 143 G 143 G Sbjct: 150 G 150
>gi|52696278|pdb|1X77|B Chain B, Crystal Struture Of A Nad(P)h-Dependent Fmn Reductase Complexed With Fmn gi|52696277|pdb|1X77|A Chain A, Crystal Struture Of A Nad(P)h-Dependent Fmn Reductase Complexed With Fmn gi|52695408|pdb|1RTT|A Chain A, Crystal Structure Determination Of A Putative Nadh- Dependent Reductase Using Sulfur Anomalous Signal Length = 193 Score = 32.3 bits (72), Expect = 0.054 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%) Query: 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 +++A D ++ A P YN+++ LKN D + + PE +GK A +L + Sbjct: 69 QIRAADALLFATPEYNYSMAGVLKNAID----------WASRPPEQPFSGKPAAILGASA 118 Query: 143 G 143 G Sbjct: 119 G 119
>gi|47169192|pdb|1SQS|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein Of Streptococcus Pneumoniae, Northeast Structural Genomics Target Spr27 gi|47169191|pdb|1SQS|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Of Streptococcus Pneumoniae, Northeast Structural Genomics Target Spr27 Length = 242 Score = 31.6 bits (70), Expect = 0.092 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 13/83 (15%) Query: 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 EL D+I+I++P+Y N+ KN+ + I FR + GK V L Sbjct: 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFR---------LAGKFVVTLD--- 123 Query: 143 GIHKDTPTDLIAPYLKVFLGFIG 165 + + +D ++ YL+ + G Sbjct: 124 -VAESNGSDNVSEYLRDIFSYXG 145
>gi|50513674|pdb|1T0I|B Chain B, Ylr011wp, A Saccharomyces Cerevisiae Na(D)ph-Dependent Fmn Reductase gi|50513673|pdb|1T0I|A Chain A, Ylr011wp, A Saccharomyces Cerevisiae Na(D)ph-Dependent Fmn Reductase Length = 191 Score = 29.3 bits (64), Expect = 0.46 Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 84 LKAHDVIVIAAPMYNFNIPTQLKNYFD 110 + A D+IV P YN+ P LKN D Sbjct: 82 VNALDIIVFVTPQYNWGYPAALKNAID 108
>gi|34810966|pdb|1NNI|1 Chain 1, Azobenzene Reductase From Bacillus Subtilis Length = 174 Score = 26.2 bits (56), Expect = 3.9 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 23/104 (22%) Query: 42 DLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNI 101 DL+ +PV +GE +Q L EL + D IV+ +P Y+ Sbjct: 33 DLSEFVLPVFNGEA--------------EQSELLKVQELKQRVTKADAIVLLSPEYHSGX 78 Query: 102 PTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIH 145 LKN D ++ ++ P L+ AV +GGI+ Sbjct: 79 SGALKNALDFLSSEQFKYK-----PVALL----AVAGGGKGGIN 113
>gi|6730020|pdb|2JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine Amidinotransferase, Deletionmutant Atdeltam302 Length = 385 Score = 25.4 bits (54), Expect = 6.6 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 15 YSQSGQLTDYFIEQWREKHVADEITVRDLA-ANPVPVLD 52 ++Q Q+T+Y +W +H+A + V ++ +P P +D Sbjct: 229 FAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPHID 267
Database: PDB protein database Posted date: Oct 7, 2004 12:08 AM Number of letters in database: 4,163,319 Number of sequences in database: 18,695 Lambda K H 0.320 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 754,432 Number of Sequences: 18695 Number of extensions: 29383 Number of successful extensions: 109 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 105 Number of HSP's gapped (non-prelim): 5 length of query: 201 length of database: 4,163,319 effective HSP length: 86 effective length of query: 115 effective length of database: 2,555,549 effective search space: 293888135 effective search space used: 293888135 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
