Structure Prediction      Fragment Libraries      Alanine Scanning
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Job 1614 [T0270] [frags] [2004-08-10] [cubic.bioc.columbia.edu] [Full] [Complete]

 
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MERHVPEPTHTLEGWHVLHDFRLLDFARWFSAPLEAREDAWEELKGLVREWRELEEAGQGSYGIYQVVGHKADLLFLNLRPGLDPLLEAEARLSRSAFARYLGRSYSFYSVVELGSQEKPLDPESPYVKPRLTPRVPKSGYVCFYPMNKRRQGQDNWYMLPAKERASLMKAHGETGRKYQGEVMQVISGAQGLDDWEWGVDLFSEDPVQFKKIVYEMRFDEVSARYGEFGPFFVGKYLDEEALRAFLGL
tmhmm (0)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (20%)
XXXXXXXXXX-X-----------------------------------------XXX-XX-------------------------------------XX----X---------XXXXXXXXXXXXXXXXXXXXXXX---------------------------------------XX-XX---X---------------------------------------------------------------XXX
psipred
--------------EEEEEE--EE-HHHHH---HHHHHHHHHHHHHHHHHHHHHH----EEEEEEEEE-----EEEEE----HHHHHHHHHHHHHHHHHHH-----EEEEEEEE--------------------------EEEEEEEE-------------HHHHHHHHHHHHHHHH------EEEEEEEEEE--EEEEEEE----HHHHHHHHHHH-HHHH-EEE-----EEEE----HHHHHHHH--
sam
------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEHH--HH--EEEEH----HHHHHHHHHHHHHHHHHHH--EEEEEEEEEEE---------------HHH--------EEEEEE-E---------EEE-HHHHHHHHHHHHHHHHHH---EEEEEEEEEE----EEEEEEE---HHHHHHHHHHHHHHHHHHHHHH----EE-----HHHHHHH---
jufo
--------------------HHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH------EEE--------EEEEEE--HHHHHHHHHHHHHHHHHH-----EEEEEEEE---------------------------EEEEEE---------------HHHHHHHHHHHHHH------HHEEEEE--------EEEEEEE---HHHHHHHHHHHHHHHHHHHH----EEEEE----HHHHHHH---
jufo_3d
------------------HH-HH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----EEEHHH-------HHH----HHHHHHHHHHHHHH-HH-------EEEEEEE---------------------------EEEEEE---------------HHHHHHHHHHHHHH--------EEEEEEEE-----EEEEEEE---HHHHHHHHHHHHHHHHHHHHH----EE------HHHHHHH---

Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1   (RECOMMENDED: click on domain number for details)     Top
Domain Span Source Parent   Parent Span     Confidence     Annotations  
  1-249     pfam     PF06778     --   73.031517   Chlorite dismutase

RosettaDOM Prediction (Z-score >= 2.5)       Top
Boundary Z-score
-- --


NR PSI-Blast Taxonomy (Top 20 by E value)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
261594 Bacillus anthracis str. Ames 0581 1 (2.38%) 6E-96 5-249 1-247 352 48 247 ref|NP_653854.1| hypothetical protein predicted by GeneMark [Bacillus anthrac...
222523 Bacillus cereus ATCC 10987 1 (2.38%) 1E-95 5-249 1-247 350 48 247 ref|NP_981809.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] ...
226900 Bacillus cereus ATCC 14579 1 (2.38%) 1E-95 5-249 1-247 350 49 247 ref|NP_835049.1| IG hypothetical 16794 [Bacillus cereus ATCC 14579] gb|AAP122...
272558 Bacillus halodurans C-125 1 (2.38%) 2E-95 1-247 9-259 350 47 251 ref|NP_244692.1| BH3825~unknown conserved protein [Bacillus halodurans C-125]...
224308 Bacillus subtilis subsp. subtilis str. 168 1 (2.38%) 3E-94 2-247 4-252 346 49 249 ref|NP_391647.1| alternate gene name: ipa-87r~similar to hypothetical protein...
262724 Thermus thermophilus HB27 1 (2.38%) 9E-90 1-249 1-249 331 100 249 ref|YP_005321.1| hypothetical cytosolic protein Cluster function: Polyketide ...
196620 Staphylococcus aureus subsp. aureus MW2 1 (2.38%) 2E-89 5-249 1-249 330 43 249 ref|NP_645359.1| conserved hypothetical protein [Staphylococcus aureus subsp....
158878 Staphylococcus aureus subsp. aureus Mu50 1 (2.38%) 4E-89 5-249 1-249 329 43 249 ref|NP_371111.1| conserved hypothetical protein [Staphylococcus aureus subsp....
176280 Staphylococcus epidermidis ATCC 12228 1 (2.38%) 9E-89 5-249 1-249 327 45 249 ref|NP_763913.1| conserved hypothetical protein [Staphylococcus epidermidis A...
262543 Exiguobacterium sp. 255-15 1 (2.38%) 5E-88 1-249 1-258 325 44 258 ref|ZP_00182509.1| COG3253: Uncharacterized conserved protein [Exiguobacterium ...
0 UNIDENTIFIED 2 (4.76%) 7E-88 5-227 1-225 325 48 225 ref|ZP_00241031.1| IG hypothetical protein 16794 [Bacillus cereus G9241] gb|EAL...
1642 Listeria innocua 1 (2.38%) 3E-87 5-249 1-251 323 44 251 ref|NP_471551.1| similar to unknown proteins [Listeria innocua Clip11262] pir...
265669 Listeria monocytogenes str. 4b F2365 1 (2.38%) 6E-87 5-249 1-251 322 44 251 ref|YP_014738.1| conserved hypothetical protein [Listeria monocytogenes str. ...
1639 Listeria monocytogenes 1 (2.38%) 5E-86 5-249 1-251 318 44 251 ref|NP_465637.1| similar to unknown proteins [Listeria monocytogenes EGD-e] r...
221109 Oceanobacillus iheyensis HTE831 1 (2.38%) 2E-84 5-249 1-249 313 43 250 ref|NP_693945.1| hypothetical protein OB3023 [Oceanobacillus iheyensis HTE831...
64091 Halobacterium sp. NRC-1 1 (2.38%) 1E-79 5-248 1-253 297 43 253 ref|NP_280706.1| Vng2021c [Halobacterium sp. NRC-1] pir||F84352 hypothetical ...
262316 Mycobacterium avium subsp. paratuberculosis str. k10 1 (2.38%) 9E-71 12-247 4-230 268 22 242 ref|NP_961731.1| hypothetical protein MAP2797c [Mycobacterium avium subsp. pa...
233413 Mycobacterium bovis AF2122/97 1 (2.38%) 2E-70 12-247 4-230 267 22 242 ref|NP_217192.1| hypothetical protein Rv2676c [Mycobacterium tuberculosis H37...
1769 Mycobacterium leprae 2 (4.76%) 3E-70 12-247 70-296 266 21 242 gb|AAA62922.1| u1764y [Mycobacterium leprae]
100226 Streptomyces coelicolor A3(2) 1 (2.38%) 1E-68 17-248 23-243 260 21 236 ref|NP_630152.1| conserved hypothetical protein SC1B5.02 [Streptomyces coelic...



Full Structure Predictions  
 

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