Jump To -------------------------------------------------- Domain Predictions     --   Domain Repeats     --   Ginzu Domain Prediction 1         --   Domain 1 Results             --   Structure Predictions                 --   Model 1                 --   Model 2                 --   Model 3                 --   Model 4                 --   Model 5         --   Domain 2 Results             --   Structure Predictions                 --   Model 1                 --   Model 2                 --   Model 3                 --   Model 4                 --   Model 5     --   Ginzu Domain Prediction 2         --   Domain 1 Results             --   Structure Predictions                 --   Model 1 (1 Mammoth Hit; 4.60 max Z-score)                 --   Model 2 (1 Mammoth Hit; 5.86 max Z-score)                 --   Model 3 (2 Mammoth Hits; 5.29 max Z-score)                 --   Model 4 (7 Mammoth Hits; 5.13 max Z-score)                 --   Model 5                 --   Model 6                 --   Model 7                 --   Model 8 (1 Mammoth Hit; 4.63 max Z-score)                 --   Model 9                 --   Model 10 (4 Mammoth Hits; 5.78 max Z-score)         --   Domain 2 Results             --   Structure Predictions                 --   Model 1 (2 Mammoth Hits; 5.50 max Z-score)                 --   Model 2 (12 Mammoth Hits; 7.05 max Z-score)                 --   Model 3 (4 Mammoth Hits; 5.55 max Z-score)                 --   Model 4 (13 Mammoth Hits; 5.69 max Z-score)                 --   Model 5 (6 Mammoth Hits; 5.50 max Z-score)                 --   Model 6                 --   Model 7 (2 Mammoth Hits; 4.85 max Z-score)                 --   Model 8 (1 Mammoth Hit; 4.50 max Z-score)                 --   Model 9 (1 Mammoth Hit; 4.50 max Z-score)                 --   Model 10 (4 Mammoth Hits; 5.23 max Z-score)         --   Domain 3 Results             --   Structure Predictions                 --   Model 1                 --   Model 2                 --   Model 3                 --   Model 4                 --   Model 5 NR PSI-Blast Taxonomy Full Structure Predictions     --   Model 1     --   Model 2     --   Model 3     --   Model 4     --   Model 5     --   Model 6     --   Model 7     --   Model 8     --   Model 9     --   Model 10

	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440
	PTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAGRCPVFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSSYRHPAVYDEKEKTCHMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKNESFENLVYLSKNVRNDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASASDQPTQYEEEMTDYQKIQQGFRQNNREMIKSAFLPVGAFNSDNFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEIEREIKKQSRNMNLYSVDGERIVLPRIFISNDKESIKCPCEPERISNSTCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYENGEEKSNKQMLL
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (5%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------
disordered (23%)	XXXXXXX------------------------------XXXXXXX-----------------------------XXX--XXXXX----X--X----------------------------------------XX-----------------------X-XXXXXXXXXXXXXXXXXX-X---X--------------------------X-------------------X----------------------XX------------------XXXX------------XXXXXXXXXXXX-X-XXX-------------------------------X-----------------------XXXXXXXXX----------------------------------------------XXXXX---------XXXXXXXXXXXXXXXX
psipred	-----------HHHHHHHHH--HHH----EEEE--------------------EEEEEEEE------------------------------------HHHHHHHHH--HHHHHHHHHHHHHHHHH-----------EE--EEEE----EEEEEEEEEEE------------------------------EEEEE---------------------EEEE-----------EEE---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----------------------EE----EEEEEE----EEEE----EEEE--------------------HHHHHHHHHH----------EEEEEEEEEE---HH------HHH-------EEEE-HHHHHHH-----EEEEEHHHHHH--------------
sam	-----------HHHHHHHH---------EEEEE-----EE--EEEE---------EEEEEEE-----------------------------------HHHHHHHH--------HHHHHHHHHHHH-H----------E-EEEEE----EEEEEEEHHHHHH----------------------------EEEEE-------H--------------EE---------------H--HHHHHHHHHHH----------HHHHHHHHHHHHHH---------EEEE---------------------E----EEEEEE---EEEEE---EEEEEEE-----E---------HHHHHHHHHHHHH----------------------HHHH----------------E---------EE--------HHHHHHHHHHH--H---HH--
jufo	-----------HHHHHHH-----HH----EEEE------------------EEEEEEEEEEE----EEEE------------------------HHHHHHHHHHHH---HH-----HHHHHHHH-----------------EE-----EEEEEEEEHHH--------------------EE--------EEEEE------------------EE--EEE-----------HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----HHHH------------------------------EEEEE-----EEEE----EEEE----------------HHHHHHHHHHHHHHHH-------EEEEEEEEEEE---------------------EEEEEHHHHHHHHHH--EEEEEHHHHHHH-------------
jufo_3d	------------HHHHHH-------------------HHH-----------EE-----EEEE-------------------------------------HHHHHHH---HH-------HHHHHH--------------------HHHHHHHHHHHHHHH-------------------------------------------------------------------------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-------------------------------------EE------------------------------------HHHHHHHHHHHHHHHH----------------EE------------EEE------EEE--HHHHH------------HHH-----------------

RosettaDOM Prediction (Z-score >= 2.5)
Boundary	Z-score
--	--

NR PSI-Blast Taxonomy (Top 20 by E value)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5854	Plasmodium reichenowi	1 (0.33%)	0.0	2-432	91-524	744	60	434	emb|CAB66387.1|	apical membrane antigen 1 [Plasmodium reichenowi]
5850	Plasmodium knowlesi	3 (1.0%)	0.0	1-445	43-487	762	85	445	gb|AAA63444.1|	merozoite receptor protein gb|AAG24614.1| apical merozoite a...
73239	Plasmodium yoelii yoelii	5 (1.66%)	0.0	4-438	46-479	702	56	435	gb|EAA20928.1|	apical membrane antigen-1 [Plasmodium yoelii yoelii]
5833	Plasmodium falciparum	175 (58.14%)	0.0	2-432	99-532	755	60	434	sp|P22621|AMA1_PLAFF	Apical membrane antigen 1 precursor (Merozoite surface antig...
5827	Plasmodium cynomolgi	2 (0.66%)	0.0	1-445	43-487	765	88	445	emb|CAA60053.1|	apical membrane antigen 1 [Plasmodium cynomolgi]
5825	Plasmodium chabaudi	1 (0.33%)	0.0	4-445	46-483	706	56	443	sp|P16445|AMA1_PLACH	Apical membrane antigen 1 precursor (Merozoite surface antig...
5857	Plasmodium fragile	1 (0.33%)	0.0	1-445	43-487	758	81	445	sp|P22622|AMA1_PLAFR	Apical membrane antigen 1 precursor (Merozoite surface antig...
5855	Plasmodium vivax	75 (24.92%)	0.0	1-445	43-487	777	100	445	gb|AAC16731.1|	apical merozoite antigen 1 [Plasmodium vivax]
32630	synthetic construct	5 (1.66%)	0.0	2-432	82-515	750	62	434	gb|AAT09769.1|	apical membrane antigen 1 [synthetic construct]
0	UNIDENTIFIED	26 (8.64%)	0.0	1-445	43-487	784	98	445	gb|AAA29479.1|	apcial membrane antigen I
36329	Plasmodium falciparum 3D7	2 (0.66%)	0.0	2-432	99-532	755	60	434	ref|NP_701204.1|	apical membrane antigen 1 precursor [Plasmodium falciparum 3...
5865	Babesia bovis	1 (0.33%)	1E-120	11-416	95-509	433	29	433	gb|AAS58045.1|	apical membrane antigen 1 [Babesia bovis]
5811	Toxoplasma gondii	1 (0.33%)	4E-94	14-344	51-388	346	29	364	gb|AAB65410.1|	apical membrane antigen 1 homolog [Toxoplasma gondii]
5821	Plasmodium berghei	3 (1.0%)	1E-55	97-369	217-460	219	20	281	pir||T09129	probable erythrocyte-binding protein MAEBL - Plasmodium berg...

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