Structure Prediction      Fragment Libraries      Alanine Scanning
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Job 1301 [T0219] [ra] [2004-06-29] [cubic.bioc.columbia.edu] [Full] [Complete]

 
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MSAVTESVLESIISPVTMSEFLEEYWPVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAALRKKLISDNRFRELAVNHQSLHESSKSELNGYLESLIQTLSENAETLTPEQIFQSQDSDFDPYQSTQLVFRQLLTSYKF
tmhmm (0)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (14%)
XXXXX-X------X---------------------------------XX---------------------------XXXXXXX---------------------X-------------------------------------------------------------------------XXXXXXX----------------------------------------------------------------------------------X-XXXXXXX------------------X-X--X----XXXXX----------------XXXXX
psipred
-----HHHHHHHH----HHHHHHHH-----EEEE-------------HHH-HHHHHHH----EE---------------------HHHHHHHH----EE---HHH---HHHHHHHHHHHH---------EEEEEE---------------EEEEEEEEEEEEEEE----------------------------------HH---EEEEEE----EEEE----EEEEEE---EEEEEEE----HHHHHHHHHHHHHH---HHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---HHH--HHH-------HHHHHHHHHHHHH---
sam
-----------------HHHHHHHH-----EEEE-----------HHHHHHHHHHH-----EEEEE---EEE------------HHHHHHH-----EEEE-------HHHHHHHHHHHHHH---------EEEEEE--------------EEEEEEE--EEEEEE--------------------------------HH-------EEEE---EEEEE----EEEEEE---EEEEEEEE----HHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-H-----------HHHHHHHHH-----
jufo
-------HHHH------HHHHHHHHH---EEEEE-----------HHHHHHHHHHHHHH---EEEE--EEEEEE-----------HHHHHHHHHHH-----------HHHHHHHHHHHH-----------EEEEEE--------------EEEEEEEEEEEEEEEE---------------------------------------HHEEEE--EEEEEE------------EEEEEEE--HHHHHHHHHHHHHHHHH-----HH-------------HHHHHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHH-----
jufo_3d
--------EEE-------HHHHHHHH---EEEEE------------HHHHHHHHHHHHH--EEEE-----------------------HHHHHH--EEEEE------HHHHHHHHHHH-----------EEEEEEE---------------EEEEEEEEEEEEEEE--------------------------------------EEEEEE----EEEE--------------EEEEEEEEE--HHHHHHHHHHHH-------HHH-------------HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH---

Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
-- -- --


Ginzu Domain Prediction 1   (RECOMMENDED: click on domain number for details)     Top
Domain Span Source Parent   Parent Span     Confidence     Annotations  
  1-330     pdbblast     1mzeA_     41-317   39.221849   OXIDOREDUCTASE

RosettaDOM Prediction (Z-score >= 2.5)       Top
Boundary Z-score
73 2.99


NR PSI-Blast Taxonomy (Top 20 by E value)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
224308 Bacillus subtilis subsp. subtilis str. 168 1 (0.24%) 1E-58 1-330 1-330 228 100 330 ref|NP_391867.1| alternate gene name: yxaQ [Bacillus subtilis] sp|P46327|YXBC...
10090 Mus musculus 55 (13.38%) 4E-57 14-324 91-415 223 14 338 dbj|BAC65729.1| mKIAA1111 protein [Mus musculus]
9606 Homo sapiens 72 (17.52%) 6E-57 14-324 169-493 222 13 338 dbj|BAA83063.1| KIAA1111 protein [Homo sapiens]
10116 Rattus norvegicus 21 (5.11%) 9E-57 14-324 109-433 222 14 338 ref|XP_228878.2| similar to mKIAA1111 protein [Rattus norvegicus]
354 Azotobacter vinelandii 2 (0.49%) 1E-56 4-323 1-299 222 18 326 ref|ZP_00091822.1| COG2850: Uncharacterized conserved protein [Azotobacter vine...
205918 Pseudomonas syringae pv. syringae B728a 1 (0.24%) 2E-55 4-323 1-299 218 17 326 ref|ZP_00128328.1| COG2850: Uncharacterized conserved protein [Pseudomonas syri...
223283 Pseudomonas syringae pv. tomato str. DC3000 1 (0.24%) 4E-55 4-329 1-306 216 18 333 ref|NP_793144.1| conserved hypothetical protein [Pseudomonas syringae pv. tom...
160488 Pseudomonas putida KT2440 1 (0.24%) 7E-55 4-323 3-301 216 18 326 ref|NP_746147.1| conserved hypothetical protein [Pseudomonas putida KT2440] g...
208964 Pseudomonas aeruginosa PAO1 1 (0.24%) 2E-53 4-320 1-297 211 19 324 ref|NP_251320.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]...
8355 Xenopus laevis 4 (0.97%) 3E-53 14-325 112-437 210 13 339 gb|AAH56031.1| LOC398683 protein [Xenopus laevis]
208963 Pseudomonas aeruginosa UCBPP-PA14 1 (0.24%) 2E-52 4-320 1-297 207 19 324 ref|ZP_00135938.2| COG2850: Uncharacterized conserved protein [Pseudomonas aeru...
205922 Pseudomonas fluorescens PfO-1 2 (0.49%) 8E-52 4-307 9-295 205 19 311 ref|ZP_00083685.1| COG2850: Uncharacterized conserved protein [Pseudomonas fluo...
7955 Danio rerio 7 (1.7%) 9E-51 14-324 111-435 202 12 337 gb|AAH60927.1| Unknown (protein for IMAGE:4200679) [Danio rerio]
3702 Arabidopsis thaliana 17 (4.14%) 7E-48 14-239 181-409 192 17 231 ref|NP_566667.1| transcription factor jumonji (jmjC) domain-containing protei...
203122 Microbulbifer degradans 2-40 3 (0.73%) 6E-47 1-316 1-312 189 17 331 ref|ZP_00066451.1| COG2850: Uncharacterized conserved protein [Microbulbifer de...
134537 Burkholderia fungorum 2 (0.49%) 8E-47 5-321 177-467 189 15 319 ref|ZP_00027388.1| COG2850: Uncharacterized conserved protein [Burkholderia fun...
99883 Tetraodon nigroviridis 20 (4.87%) 4E-45 15-284 53-330 183 13 289 emb|CAF95625.1| unnamed protein product [Tetraodon nigroviridis]
229193 Yersinia pestis biovar Medievalis str. 91001 1 (0.24%) 2E-44 15-323 24-317 181 16 327 ref|NP_669109.1| hypothetical protein y1792 [Yersinia pestis KIM] ref|NP_9931...
214092 Yersinia pestis CO92 1 (0.24%) 4E-44 15-323 6-299 180 16 327 ref|NP_405213.1| conserved hypothetical protein [Yersinia pestis] pir||AC0199...
6087 Hydra vulgaris 1 (0.24%) 1E-43 8-291 46-333 179 13 303 gb|AAS59176.1| PSR-like protein [Hydra vulgaris]



Full Structure Predictions  
 

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