RID=1097184156-7828-44282094721.BLASTQ4,

RID=1097184156-7828-44282094721.BLASTQ4, BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1097184156-7828-44282094721.BLASTQ4
Query= (294 letters)
Database: PDB protein database 18,695 sequences; 4,163,319 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 7 Blast Hits on the Query Sequence

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40889957|pdb|1VHV|B  Chain B, Crystal Structure Of Diphth...    70   5e-13 
gi|14278209|pdb|1I2M|D  Chain D, Ran-Rcc1-So4 Complex >gi|14...    28   1.4   
gi|4389392|pdb|1A12|C  Chain C, Regulator Of Chromosome Cond...    28   1.4   
gi|47169244|pdb|1ULZ|A  Chain A, Crystal Structure Of The Bi...    28   1.8   
gi|8569376|pdb|1E2R|B  Chain B, Cytochrome Cd1 Nitrite Reduc...    28   2.3   
gi|2624770|pdb|1AOF|B  Chain B, Cytochrome Cd1 Nitrite Reduc...    28   2.3   
gi|2981889|pdb|248L|   The Response Of T4 Lysozyme To Large-...    26   6.7   

Alignments


>gi|40889957|pdb|1VHV|B   Chain B, Crystal Structure Of Diphthine Synthase
 gi|40889956|pdb|1VHV|A   Chain A, Crystal Structure Of Diphthine Synthase
          Length = 268

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 70/231 (30%), Positives = 96/231 (41%), Gaps = 21/231 (9%)

Query: 23  TLEALDAVRRADVVYVESYTMPGSSWLYKXXXXXXXXXXXXXXXXXDLEERSREIVSRAL 82
           +++ L+AVR AD VYVE YT    S + +                 DLEE S  ++ RA 
Sbjct: 29  SVKGLEAVREADEVYVEYYTSKLLSSIEEXEEFFGKRVVELERS--DLEENSFRLIERAK 86

Query: 83  DAVVAVVTAGDPMVATTHXXXXXXXXXXXXXXRYIPGVSGVQAARGATMLSFYRFGGTVT 142
              V ++  GDP VATTH              R I G S   A  G T L  YRFG + T
Sbjct: 87  SKSVVLLVPGDPXVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSAT 146

Query: 143 LPGPW-RGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYARE 201
           +   W R  TP++V   I  N     HT   LD+      +  G  V  L+  D +  ++
Sbjct: 147 V--SWHRSQTPVNV---IKANRSIDAHTLLFLDLHPEPXTI--GHAVENLIAEDAQ-XKD 198

Query: 202 AGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSIVIPAR 252
             A  +          A AG G  V+    LE L   D    ++  V+ A+
Sbjct: 199 LYAVGI----------ARAGSGEEVVKCDRLENLKKIDFGKPLHVXVVLAK 239



>gi|14278209|pdb|1I2M|D   Chain D, Ran-Rcc1-So4 Complex
 gi|14278207|pdb|1I2M|B   Chain B, Ran-Rcc1-So4 Complex
          Length = 402

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 148 RGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPAL 207
           + +T    + + ++    G H T  +D + +   L   +   L L    E A E   P L
Sbjct: 265 QNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG---EGAEEKSIPTL 321

Query: 208 LARLPSV-LVEAGAGGGHRV 226
           ++RLP+V  V  GA  G+ V
Sbjct: 322 ISRLPAVSSVACGASVGYAV 341



>gi|4389392|pdb|1A12|C   Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
 gi|4389391|pdb|1A12|B   Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
 gi|4389390|pdb|1A12|A   Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
          Length = 413

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 148 RGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPAL 207
           + +T    + + ++    G H T  +D + +   L   +   L L    E A E   P L
Sbjct: 276 QNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG---EGAEEKSIPTL 332

Query: 208 LARLPSV-LVEAGAGGGHRV 226
           ++RLP+V  V  GA  G+ V
Sbjct: 333 ISRLPAVSSVACGASVGYAV 352



>gi|47169244|pdb|1ULZ|A   Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
           Pyruvate Carboxylase
          Length = 451

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 179 GVQLSPGQ-GVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHR 225
           GV + PG  GV   LE  +  ARE G P        VL++A AGGG R
Sbjct: 126 GVPVVPGSDGVLKSLEEAKALAREIGYP--------VLLKATAGGGGR 165



>gi|8569376|pdb|1E2R|B   Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
           Bound
 gi|8569375|pdb|1E2R|A   Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
           Bound
          Length = 567

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 141 VTLPGPWRGVTPISVAR-----RIYLNLCAGLHTTALLDVDERGVQLSPGQGVSL---LL 192
           V  PG   GVT +S A+     +IY   CAG H   +L     G  L+P     L    L
Sbjct: 37  VAAPGAPEGVTALSDAQYNEANKIYFERCAGCH--GVLRKGATGKALTPDLTRDLGFDYL 94

Query: 193 EADREYAREAGAP 205
           ++   YA  AG P
Sbjct: 95  QSFITYASPAGMP 107



>gi|2624770|pdb|1AOF|B   Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
 gi|2624769|pdb|1AOF|A   Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
 gi|5822313|pdb|1QKS|B   Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
 gi|5822312|pdb|1QKS|A   Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
 gi|2914162|pdb|1AOQ|B   Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
           Product Bound
 gi|2914161|pdb|1AOQ|A   Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
           Product Bound
 gi|2914160|pdb|1AOM|B   Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
           Reductase
 gi|2914159|pdb|1AOM|A   Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
           Reductase
          Length = 567

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 141 VTLPGPWRGVTPISVAR-----RIYLNLCAGLHTTALLDVDERGVQLSPGQGVSL---LL 192
           V  PG   GVT +S A+     +IY   CAG H   +L     G  L+P     L    L
Sbjct: 37  VAAPGAPEGVTALSDAQYNEANKIYFERCAGCH--GVLRKGATGKALTPDLTRDLGFDYL 94

Query: 193 EADREYAREAGAP 205
           ++   YA  AG P
Sbjct: 95  QSFITYASPAGMP 107



>gi|2981889|pdb|248L|    The Response Of T4 Lysozyme To Large-To-Small Substitutions Within
           The Core And Its Relation To The Hydrophobic Effect
          Length = 164

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 186 QGVSLLLEADREYAREAGAPALLARLPSV------LVEAGAGGGHRVLYWSSLERLSTAD 239
           +G+ L +  D E    AGA  LL + PS+      L +A     + V+     E+L   D
Sbjct: 11  EGLRLKIYKDTEGYYTAGAGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70

Query: 240 VEGGVYSIVIPARLSGVEEWL 260
           V+  V  I+  A+L  V + L
Sbjct: 71  VDAAVRGILRNAKLKPVYDSL 91






  Database: PDB protein database
    Posted date:  Oct 7, 2004 12:08 AM
  Number of letters in database: 4,163,319
  Number of sequences in database:  18,695
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,082,929
Number of Sequences: 18695
Number of extensions: 41255
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 5
length of query: 294
length of database: 4,163,319
effective HSP length: 89
effective length of query: 205
effective length of database: 2,499,464
effective search space: 512390120
effective search space used: 512390120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)