RID=1097335932-4442-28271126783.BLASTQ4,

BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1097335932-4442-28271126783.BLASTQ4
Query= (194 letters)
Database: PDB protein database 18,695 sequences; 4,163,319 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 9 Blast Hits on the Query Sequence

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40889289|pdb|1P4A|D  Chain D, Crystal Structure Of The Pu...    53   4e-08 
gi|34809640|pdb|1O57|D  Chain D, Crystal Structure Of The Pu...    53   4e-08 
gi|17943169|pdb|1G2P|A  Chain A, Crystal Structure Of Adenin...    36   0.004 
gi|27065274|pdb|1L1R|A  Chain A, Crystal Structure Of Aprtas...    34   0.014 
gi|47168476|pdb|1ORE|A  Chain A, Human Adenine Phosphoribosy...    27   2.2   
gi|5542150|pdb|1BZY|D  Chain D, Human Hgprtase With Transiti...    27   2.2   
gi|6730253|pdb|1D6N|B  Chain B, Ternary Complex Structure Of...    27   2.2   
gi|51247799|pdb|1U08|B  Chain B, Crystal Structure And React...    25   8.2   
gi|33357294|pdb|1LM6|A  Chain A, Crystal Structure Of Peptid...    25   8.2   

Alignments


>gi|40889289|pdb|1P4A|D   Chain D, Crystal Structure Of The Purr Complexed With Cprpp
 gi|40889288|pdb|1P4A|C   Chain C, Crystal Structure Of The Purr Complexed With Cprpp
 gi|40889287|pdb|1P4A|B   Chain B, Crystal Structure Of The Purr Complexed With Cprpp
 gi|40889286|pdb|1P4A|A   Chain A, Crystal Structure Of The Purr Complexed With Cprpp
          Length = 285

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 32  PLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNL 91
           P ++ ++G  FAS FA+  I  ++T+ + GI  A      L VPVV  RK   +T   + 
Sbjct: 112 PSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVT-EGST 170

Query: 92  LTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQXXXXXXXXX 151
           ++ +  S +      ++++   +    +VLIIDDF+  G   +G+++++ +         
Sbjct: 171 VSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIG 230

Query: 152 XVIE 155
            ++E
Sbjct: 231 VLVE 234



>gi|34809640|pdb|1O57|D   Chain D, Crystal Structure Of The Purine Operon Repressor Of
           Bacillus Subtilis
 gi|34809639|pdb|1O57|C   Chain C, Crystal Structure Of The Purine Operon Repressor Of
           Bacillus Subtilis
 gi|34809638|pdb|1O57|B   Chain B, Crystal Structure Of The Purine Operon Repressor Of
           Bacillus Subtilis
 gi|34809637|pdb|1O57|A   Chain A, Crystal Structure Of The Purine Operon Repressor Of
           Bacillus Subtilis
          Length = 291

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 32  PLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNL 91
           P ++ ++G  FAS FA+  I  ++T+ + GI  A      L VPVV  RK   +T   + 
Sbjct: 112 PSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVT-EGST 170

Query: 92  LTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQXXXXXXXXX 151
           ++ +  S +      ++++   +    +VLIIDDF+  G   +G+++++ +         
Sbjct: 171 VSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIG 230

Query: 152 XVIE 155
            ++E
Sbjct: 231 VLVE 234



>gi|17943169|pdb|1G2P|A   Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
 gi|17943168|pdb|1G2Q|B   Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
 gi|17943167|pdb|1G2Q|A   Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
          Length = 187

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 11  EGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFA----SRFAKDGITKIVTIESSGIAPAV 66
           EG++  D       FL    +P L Q++ D F       F +  I  IV +ES G     
Sbjct: 23  EGILFED-------FLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGP 75

Query: 67  MTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTE---SQIAVSGTHLSDQDHVLII 123
              L LGV  V  RK   L           +  T + E       +    +    +V+I+
Sbjct: 76  TLALALGVGFVPVRKAGKLP-------GECFKATYEKEYGSDLFEIQKNAIPAGSNVIIV 128

Query: 124 DDFLANGQAAHGLVSIVKQXXXXXXXXXXVIEKSFQPGRDEL 165
           DD +A G +A     +V+Q          V+E  F  GR +L
Sbjct: 129 DDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKL 170



>gi|27065274|pdb|1L1R|A   Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
           Complexed With 9-Deazaadenine, Mg2+ And Prpp
 gi|27065273|pdb|1L1Q|A   Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
           Complexed With 9-Deazaadenine
          Length = 186

 Score = 34.3 bits (77), Expect = 0.014
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 32  PLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNL 91
           P  +  +  E  + +    ITK+V IES G     +    LGV  V  RK   L      
Sbjct: 35  PAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKL---PGD 91

Query: 92  LTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANG 130
           +    +    Q    I V    L   D VL+ DD LA G
Sbjct: 92  VCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATG 130



>gi|47168476|pdb|1ORE|A   Chain A, Human Adenine Phosphoribosyltransferase
          Length = 180

 Score = 26.9 bits (58), Expect = 2.2
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 51  ITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVS 110
           I  I  ++S G         +LG+  V  RK   L      L AS YS  +  ++++ + 
Sbjct: 58  IDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLP--GPTLWAS-YSL-EYGKAELEIQ 113

Query: 111 GTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQXXXXXXXXXXVIEKSFQPGRDELVKLGY 170
              L     V+++DD LA G   +    ++ +          ++E +   GR++L  + +
Sbjct: 114 KDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPF 173



>gi|5542150|pdb|1BZY|D   Chain D, Human Hgprtase With Transition State Inhibitor
 gi|5542149|pdb|1BZY|C   Chain C, Human Hgprtase With Transition State Inhibitor
 gi|5542148|pdb|1BZY|B   Chain B, Human Hgprtase With Transition State Inhibitor
 gi|5542147|pdb|1BZY|A   Chain A, Human Hgprtase With Transition State Inhibitor
 gi|1065266|pdb|1HMP|B   Chain B, Hypoxanthine Guanine Phosphoribosyltransferase (Hgprtase)
           (E.C.2.4.2.8)
 gi|1065265|pdb|1HMP|A   Chain A, Hypoxanthine Guanine Phosphoribosyltransferase (Hgprtase)
           (E.C.2.4.2.8)
          Length = 217

 Score = 26.9 bits (58), Expect = 2.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 83  KSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQD--HVLIIDDFLANGQAAHGLVSIV 140
           +S+ +T + +    Y   + T     + G  LS     +VLI++D +  G+    L+S+V
Sbjct: 90  RSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLV 149

Query: 141 KQ 142
           +Q
Sbjct: 150 RQ 151



>gi|6730253|pdb|1D6N|B   Chain B, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
           And The Inhibitor Hpp Reveals The Involvement Of The
           Flexible Loop In Substrate Binding
 gi|6730252|pdb|1D6N|A   Chain A, Ternary Complex Structure Of Human Hgprtase, Prpp, Mg2+,
           And The Inhibitor Hpp Reveals The Involvement Of The
           Flexible Loop In Substrate Binding
          Length = 214

 Score = 26.9 bits (58), Expect = 2.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 83  KSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQD--HVLIIDDFLANGQAAHGLVSIV 140
           +S+ +T + +    Y   + T     + G  LS     +VLI++D +  G+    L+S+V
Sbjct: 87  RSIPMTVDFIRLGSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLV 146

Query: 141 KQ 142
           +Q
Sbjct: 147 RQ 148



>gi|51247799|pdb|1U08|B   Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
           Coli Identify A Methionine Aminotransferase Function.
 gi|51247798|pdb|1U08|A   Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
           Coli Identify A Methionine Aminotransferase Function.
          Length = 386

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 67  MTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDF 126
           MTG K+G  V  A     +      LT SV      T +Q+A++    ++ +H L + DF
Sbjct: 240 MTGWKVGYCVAPAPISAEIRKVHQYLTFSV-----NTPAQLALADMLRAEPEHYLALPDF 294



>gi|33357294|pdb|1LM6|A   Chain A, Crystal Structure Of Peptide Deformylase From
          Streptococcus Pneumoniae
          Length = 215

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 4  LKRKIEEEGVVLSDQVL----KVDSFLNHQIDPLLMQRIG 39
          L+   EE    LSDQ +    K+  FL H  DP++ +++G
Sbjct: 39 LRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMG 78






  Database: PDB protein database
    Posted date:  Oct 9, 2004 12:04 AM
  Number of letters in database: 4,163,319
  Number of sequences in database:  18,695
  
Lambda     K      H
   0.317    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,590
Number of Sequences: 18695
Number of extensions: 20647
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 4,163,319
effective HSP length: 85
effective length of query: 109
effective length of database: 2,574,244
effective search space: 280592596
effective search space used: 280592596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)