BLASTP 2.2.9 [May-01-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1097422335-31621-39872936288.BLASTQ4

Query= 
         (362 letters)


Database: PDB protein database 
           18,695 sequences; 4,163,319 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42543912|pdb|1V8G|B  Chain B, Crystal Structure Of Anthra...   194   2e-50 
gi|24987471|pdb|1KHD|D  Chain D, Crystal Structure Analysis ...   181   1e-46 
gi|30749242|pdb|1GXB|D  Chain D, Anthranilate Phosphoribosyl...   151   1e-37 
gi|4389236|pdb|1BRW|B  Chain B, The Crystal Structure Of Pyr...    38   0.002 
gi|42543737|pdb|1UOU|A  Chain A, Crystal Structure Of Human ...    35   0.014 
gi|18158909|pdb|1KEE|G  Chain G, Inactivation Of The Amidotr...    28   2.3   
gi|22219407|pdb|1M6V|G  Chain G, Crystal Structure Of The G3...    28   2.3   
gi|3891753|pdb|1A9X|G  Chain G, Carbamoyl Phosphate Syntheta...    28   2.3   
gi|42543910|pdb|1V8F|B  Chain B, Crystal Structure Of Pantoa...    27   6.7   
gi|33358184|pdb|1UFV|B  Chain B, Crystal Structure Of Pantot...    27   6.7   
gi|7245743|pdb|1DTJ|D  Chain D, Crystal Structure Of Nova-2 ...    27   6.7   
gi|7245685|pdb|1EC6|B  Chain B, Crystal Structure Of Nova-2 ...    26   8.8   

Alignments


>gi|42543912|pdb|1V8G|B   Chain B, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
 gi|42543911|pdb|1V8G|A   Chain A, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
          Length = 329

 Score =  194 bits (492), Expect = 2e-50
 Identities = 127/342 (37%), Positives = 187/342 (54%), Gaps = 18/342 (5%)

Query: 19  LQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQS 78
           +++ I GE L   +A E+M+  ++  V P  +  +L AL+ +G    E+  MA  ++  +
Sbjct: 4   VKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAA 63

Query: 79  KMGTGENYSQLPITNSPFXXXXXXXXXXXXXXXFNISTAVAFVAAAYGVPVAKHGNRSAS 138
           +         L I  +                  N+ST  A VAAA GV VAKHGNR+AS
Sbjct: 64  RPLRVHRRPLLDIVGT----------GGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAAS 113

Query: 139 SLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVF 198
           S  GSAD+LEALGV+L A PE+V  A++E+G  FLFA  +HPA++ VA +R  L +RTVF
Sbjct: 114 SRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVF 173

Query: 199 NLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNLGKQKAIVLHGRERLDEAGLGDLTDL 258
           NLLGPL NP      V+G+F+P+ L  +A+AL+ LG  + +V+HG E  DE  LG+   +
Sbjct: 174 NLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG-EGADELVLGE-NRV 230

Query: 259 AVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTXXXXXXXXXXX 318
             +  G   LT   P+EVG+  AP+ AL+GG  +ENA + + +L  KG            
Sbjct: 231 VEVGKGAYALT---PEEVGLKRAPLEALKGGGPEENAALARRLL--KGEEKGPLADAVAL 285

Query: 319 XXXXXXXXXXXXXDHAQGVSVAKEILQTGTAWAKLAQLVYFL 360
                           +GV++A+E+L +G A+  L + V FL
Sbjct: 286 AAGAGFYAAGKTPSLKEGVALAREVLASGEAYLLLERYVAFL 327



>gi|24987471|pdb|1KHD|D   Chain D, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 gi|24987470|pdb|1KHD|C   Chain C, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 gi|24987469|pdb|1KHD|B   Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 gi|24987468|pdb|1KHD|A   Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora At 1.9
           Resolution (Current Name, Pectobacterium Carotovorum)
 gi|24987467|pdb|1KGZ|B   Chain B, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (Current Name, Pectobacterium Carotovorum)
 gi|24987466|pdb|1KGZ|A   Chain A, Crystal Structure Analysis Of The Anthranilate
           Phosphoribosyltransferase From Erwinia Carotovora
           (Current Name, Pectobacterium Carotovorum)
          Length = 345

 Score =  181 bits (460), Expect = 1e-46
 Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 15/340 (4%)

Query: 18  LLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQ 77
           +L++L   +S+++ ++ +L    +   +      A L ++  +G   +E+ G A  L + 
Sbjct: 16  ILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLAD 75

Query: 78  SKMGTGENYSQLPITNSPFXXXXXXXXXXXXXXXFNISTAVAFVAAAYGVPVAKHGNRSA 137
           ++          P     +                NISTA AFVAA+ G  VAKHGNRS 
Sbjct: 76  AQ----------PFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSV 125

Query: 138 SS-LTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRT 196
              L GS D+L+A G+ L  S E  + AL ++ + FLFAP +H   +    +R+ L+ RT
Sbjct: 126 CQPLAGSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRT 185

Query: 197 VFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNLGKQKAIVLHGRERLDEAGLGDLT 256
           +FN+LGPL+NP RP   ++G+++P+L+  +AQAL  LG + A V+HG   +DE  +   T
Sbjct: 186 IFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHG-GGMDEVAIHTPT 244

Query: 257 DLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTXXXXXXXXX 316
            +A L++GE++   ++PQ+ G+    + AL+GG  +EN +IL  +LQGKG          
Sbjct: 245 QVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAA 304

Query: 317 XXXXXXXXXXXXXXXDHAQGVSVAKEILQTGTAWAKLAQL 356
                           +AQ   +A E +++GTA+ ++  L
Sbjct: 305 NVALLLKLFGQDNLRHNAQ---LALETIRSGTAFERVTAL 341



>gi|30749242|pdb|1GXB|D   Chain D, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 gi|30749241|pdb|1GXB|C   Chain C, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 gi|30749240|pdb|1GXB|B   Chain B, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 gi|30749239|pdb|1GXB|A   Chain A, Anthranilate Phosphoribosyltransferase In Complex With
           Pyrophosphate And Magnesium
 gi|24987891|pdb|1O17|D   Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
 gi|24987890|pdb|1O17|C   Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
 gi|24987889|pdb|1O17|B   Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
 gi|24987888|pdb|1O17|A   Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
          Length = 345

 Score =  151 bits (382), Expect = 1e-37
 Identities = 96/286 (33%), Positives = 152/286 (53%), Gaps = 14/286 (4%)

Query: 18  LLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQ 77
           +L++LI+   L  ++A EL +  +   VP  L  AIL AL  KG S +E+ G A  ++  
Sbjct: 6   ILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMR-- 63

Query: 78  SKMGTGENYSQLPITNSPFXXXXXXXXXXXXXXXFNISTAVAFVAAAYGVPVAKHGNRSA 137
                     +L I                     N+STA A + +    PVAKHGNR+ 
Sbjct: 64  ----------ELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAV 112

Query: 138 SSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTV 197
           S  +GSADVLEALG N+   PE+ +  + +    FLFA  +HPA+K VA +R+TL IRT+
Sbjct: 113 SGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTI 172

Query: 198 FNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNLGKQKAIVLHGRERLDEAGLGDLTD 257
           FN+LGPL NP     Q++G+F+   L  ++++   L   K I+++G   +DE      T 
Sbjct: 173 FNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTF 232

Query: 258 LAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENA-EILKAVL 302
           + ++S   ++   +N  + G++P PI  L     +++A +I++A L
Sbjct: 233 MKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFL 278



>gi|4389236|pdb|1BRW|B   Chain B, The Crystal Structure Of Pyrimidine Nucleoside
           Phosphorylase In A Closed Conformation
 gi|6729724|pdb|1BRW|A   Chain A, The Crystal Structure Of Pyrimidine Nucleoside
           Phosphorylase In A Closed Conformation
          Length = 433

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 13/174 (7%)

Query: 18  LLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQ 77
           L+ +  DG++L++ +   +++G+ +  +P     A+  A+ F+G++ +E   +   +   
Sbjct: 6   LIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQS 65

Query: 78  SKMGTGENYSQLPITNSPFXXXXXXXXXXXXXXXFNISTAVAFVAAAYGVPVAKHGNRSA 137
            +M    +   + +                       +  +  + A+ GVPVAK   R  
Sbjct: 66  GEMLDLSSIRGVKVDKHSTGGVGDTT-----------TLVLGPLVASVGVPVAKMSGRGL 114

Query: 138 SSLTGSADVLEAL-GVNLGASPEKVQAALQEVGITFLFAPG-WHPALKAVATLR 189
               G+ D LE++ G ++  S ++    + E GI  +   G   PA K +  LR
Sbjct: 115 GHTGGTIDKLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALR 168



>gi|42543737|pdb|1UOU|A   Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
           Complex With A Small Molecule Inhibitor
          Length = 474

 Score = 35.4 bits (80), Expect = 0.014
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 18  LLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVL-QS 76
           L++   DG  LS +     +   ++ +      GA+L A+  +G+  +E + + + L QS
Sbjct: 33  LIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQS 92

Query: 77  QSKMGTGENYSQLPITNSPFXXXXXXXXXXXXXXXFNISTAVAFVAAAYGVPVAKHGNRS 136
             ++   E + Q  +                      +S  +A   AA G  V     R 
Sbjct: 93  GQQLEWPEAWRQQLVDKH-----------STGGVGDKVSLVLAPALAACGCKVPMISGRG 141

Query: 137 ASSLTGSADVLEAL-GVNLGASPEKVQAALQEVG 169
                G+ D LE++ G N+  SPE++Q  L + G
Sbjct: 142 LGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAG 175



>gi|18158909|pdb|1KEE|G   Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158907|pdb|1KEE|E   Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158905|pdb|1KEE|C   Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158903|pdb|1KEE|A   Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|6730132|pdb|1C3O|G   Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730130|pdb|1C3O|E   Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730128|pdb|1C3O|C   Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730126|pdb|1C3O|A   Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730122|pdb|1C30|G   Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730120|pdb|1C30|E   Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730118|pdb|1C30|C   Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730116|pdb|1C30|A   Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730193|pdb|1CS0|G   Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730191|pdb|1CS0|E   Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730189|pdb|1CS0|C   Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730187|pdb|1CS0|A   Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|4929941|pdb|1BXR|G   Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929939|pdb|1BXR|E   Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929937|pdb|1BXR|C   Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929935|pdb|1BXR|A   Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|3318829|pdb|1JDB|K   Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318825|pdb|1JDB|H   Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318821|pdb|1JDB|E   Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318817|pdb|1JDB|B   Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
          Length = 1073

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 46/183 (25%)

Query: 118 VAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPG 177
           V FV+ A GVP+AK   R                V  G S       L E G+T    P 
Sbjct: 850 VPFVSKATGVPLAKVAAR----------------VMAGKS-------LAEQGVTKEVIPP 886

Query: 178 WHPALKAVATLRRTLRIRTVFNLLGPLVNP-LRPTGQVVGLFTPKLLTTVAQAL--DNLG 234
           ++   + V    +       F  + PL+ P +R TG+V+G+       T A+A     LG
Sbjct: 887 YYSVKEVVLPFNK-------FPGVDPLLGPEMRSTGEVMGVG-----RTFAEAFAKAQLG 934

Query: 235 KQKAIVLHGRERL-----DEAGLGDLTDLAVLSDGELQL---TTINPQEVGVTPAPIGAL 286
               +  HGR  L     D+  + DL    +    EL     T I   E G+ P  +  +
Sbjct: 935 SNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKV 994

Query: 287 RGG 289
             G
Sbjct: 995 HEG 997



>gi|22219407|pdb|1M6V|G   Chain G, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219405|pdb|1M6V|E   Chain E, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219403|pdb|1M6V|C   Chain C, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219401|pdb|1M6V|A   Chain A, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|5821982|pdb|1CE8|G   Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821980|pdb|1CE8|E   Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821978|pdb|1CE8|C   Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821976|pdb|1CE8|A   Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
          Length = 1073

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 46/183 (25%)

Query: 118 VAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPG 177
           V FV+ A GVP+AK   R                V  G S       L E G+T    P 
Sbjct: 850 VPFVSKATGVPLAKVAAR----------------VMAGKS-------LAEQGVTKEVIPP 886

Query: 178 WHPALKAVATLRRTLRIRTVFNLLGPLVNP-LRPTGQVVGLFTPKLLTTVAQAL--DNLG 234
           ++   + V    +       F  + PL+ P +R TG+V+G+       T A+A     LG
Sbjct: 887 YYSVKEVVLPFNK-------FPGVDPLLGPEMRSTGEVMGVG-----RTFAEAFAKAQLG 934

Query: 235 KQKAIVLHGRERL-----DEAGLGDLTDLAVLSDGELQL---TTINPQEVGVTPAPIGAL 286
               +  HGR  L     D+  + DL    +    EL     T I   E G+ P  +  +
Sbjct: 935 SNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKV 994

Query: 287 RGG 289
             G
Sbjct: 995 HEG 997



>gi|3891753|pdb|1A9X|G   Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|3891751|pdb|1A9X|E   Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|3891749|pdb|1A9X|C   Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|3891747|pdb|1A9X|A   Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 1058

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 46/183 (25%)

Query: 118 VAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVNLGASPEKVQAALQEVGITFLFAPG 177
           V FV+ A GVP+AK   R                V  G S       L E G+T    P 
Sbjct: 835 VPFVSKATGVPLAKVAAR----------------VMAGKS-------LAEQGVTKEVIPP 871

Query: 178 WHPALKAVATLRRTLRIRTVFNLLGPLVNP-LRPTGQVVGLFTPKLLTTVAQAL--DNLG 234
           ++   + V    +       F  + PL+ P +R TG+V+G+       T A+A     LG
Sbjct: 872 YYSVKEVVLPFNK-------FPGVDPLLGPEMRSTGEVMGVG-----RTFAEAFAKAQLG 919

Query: 235 KQKAIVLHGRERL-----DEAGLGDLTDLAVLSDGELQL---TTINPQEVGVTPAPIGAL 286
               +  HGR  L     D+  + DL    +    EL     T I   E G+ P  +  +
Sbjct: 920 SNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKV 979

Query: 287 RGG 289
             G
Sbjct: 980 HEG 982



>gi|42543910|pdb|1V8F|B   Chain B, Crystal Structure Of Pantoate-Beta-Alanine (Pantothenate
           Synthetase) From Thermus Thermophilus Hb8
 gi|42543909|pdb|1V8F|A   Chain A, Crystal Structure Of Pantoate-Beta-Alanine (Pantothenate
           Synthetase) From Thermus Thermophilus Hb8
          Length = 276

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 159 EKVQAALQEVGITFLFAPG 177
           E+ +A LQE G+  LFAPG
Sbjct: 71  ERDRALLQEAGVDLLFAPG 89



>gi|33358184|pdb|1UFV|B   Chain B, Crystal Structure Of Pantothenate Synthetase From Thermus
           Thermophilus Hb8
 gi|33358183|pdb|1UFV|A   Chain A, Crystal Structure Of Pantothenate Synthetase From Thermus
           Thermophilus Hb8
          Length = 276

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 159 EKVQAALQEVGITFLFAPG 177
           E+ +A LQE G+  LFAPG
Sbjct: 71  ERDRALLQEAGVDLLFAPG 89



>gi|7245743|pdb|1DTJ|D   Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain
 gi|7245742|pdb|1DTJ|C   Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain
 gi|7245741|pdb|1DTJ|B   Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain
 gi|7245740|pdb|1DTJ|A   Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain
          Length = 76

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 37 MQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPITNSP 95
          M+  +  AVP  L GAIL       V   ELTG    +  + +   G    ++ IT SP
Sbjct: 1  MKELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP 59



>gi|7245685|pdb|1EC6|B   Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain Bound To 20-Mer Rna Hairpin
 gi|7245684|pdb|1EC6|A   Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
          Domain Bound To 20-Mer Rna Hairpin
          Length = 87

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 44 AVPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPITNSP 95
          AVP  L GAIL       V   ELTG    +  + +   G    ++ IT SP
Sbjct: 8  AVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP 59






  Database: PDB protein database
    Posted date:  Oct 9, 2004 11:36 PM
  Number of letters in database: 4,163,319
  Number of sequences in database:  18,695
  
Lambda     K      H
   0.316    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,129,675
Number of Sequences: 18695
Number of extensions: 38382
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 5
length of query: 362
length of database: 4,163,319
effective HSP length: 91
effective length of query: 271
effective length of database: 2,462,074
effective search space: 667222054
effective search space used: 667222054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)