BLASTP 2.2.9 [May-01-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1097501783-2599-174694171317.BLASTQ4

Query= 
         (144 letters)


Database: PDB protein database 
           18,695 sequences; 4,163,319 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20149882|pdb|1GQP|B  Chain B, Apc10DOC1 SUBUNIT OF S. CER...    29   0.34  
gi|1942665|pdb|1EUU|   Sialidase Or Neuraminidase, Large 68k...    29   0.34  
gi|40889071|pdb|1K66|B  Chain B, Crystal Structure Of The Cy...    25   3.7   
gi|38492529|pdb|1ND1|A  Chain A, Amino Acid Sequence And Cry...    25   3.7   
gi|21466021|pdb|1L9Z|H  Chain H, Thermus Aquaticus Rna Polym...    25   3.7   
gi|23200279|pdb|1KQX|A  Chain A, Crystal Structure Of Apo-Cr...    25   3.7   
gi|49259285|pdb|1T9G|R  Chain R, Structure Of The Human Mcad...    25   4.9   
gi|2781202|pdb|1EFV|A  Chain A, Three-Dimensional Structure ...    25   4.9   
gi|16975123|pdb|1JHJ|A  Chain A, Crystal Structure Of The Ap...    25   6.4   
gi|52696270|pdb|1WNE|A  Chain A, Foot And Mouth Disease Viru...    24   8.3   
gi|48425079|pdb|1NZJ|A  Chain A, Crystal Structure And Activ...    24   8.3   

Alignments


>gi|20149882|pdb|1GQP|B   Chain B, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
 gi|20149881|pdb|1GQP|A   Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
          Length = 221

 Score = 28.9 bits (63), Expect = 0.34
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 25  HPPENIIDGNPETFWTTTGMFPQEFIICFHKHVRIERLVI-------QSYFVQTLKIEKS 77
           +P +  +D N +TFW + G  P +  I F K + I  + I       +SY    +K+   
Sbjct: 70  NPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAG 129

Query: 78  TSKEPVDFEQWIE 90
            S     F + +E
Sbjct: 130 HSPSDARFYKMLE 142



>gi|1942665|pdb|1EUU|    Sialidase Or Neuraminidase, Large 68kd Form
 gi|1942664|pdb|1EUT|    Sialidase, Large 68kd Form, Complexed With Galactose
          Length = 605

 Score = 28.9 bits (63), Expect = 0.34
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 29  NIIDGNPETFWTT 41
           N+IDGNP TFW T
Sbjct: 486 NVIDGNPSTFWHT 498



>gi|40889071|pdb|1K66|B   Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
           Response Regulator, Rcpb
 gi|40889070|pdb|1K66|A   Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
           Response Regulator, Rcpb
          Length = 149

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 15/88 (17%)

Query: 4   IDLCL-SSEGSEVILATSSDEKHPPENIIDGNPETFWTTTGMFPQEFIICFHKHVRIERL 62
           +DL L  ++G EV+     DE      ++   P    TT+   P++  IC+         
Sbjct: 68  LDLNLPGTDGREVLQEIKQDE------VLKKIPVVIMTTSSN-PKDIEICYSYS------ 114

Query: 63  VIQSYFVQTLKIEKSTSKEPVDFEQWIE 90
            I SY V+ L+I++ T       + W++
Sbjct: 115 -ISSYIVKPLEIDRLTETVQTFIKYWLD 141



>gi|38492529|pdb|1ND1|A   Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
           Metalloproteinase From Bothrops Asper Snake Venom That
           Exerts Multiple Tissue-Damaging Activities.
          Length = 202

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 72  LKIEKSTSKEPVDFEQWIEKDLV----HTEGQL 100
           +K++K +SK    F +W E+DL+    H   QL
Sbjct: 65  IKVQKDSSKTLKSFGEWRERDLLPRISHDHAQL 97



>gi|21466021|pdb|1L9Z|H   Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
           Promoter Dna Complex At 6.5 A Resolution
          Length = 438

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 81  EPVDFEQWIEKDLVHTEGQLQNEE 104
           +P+D E  +E DL+  EG L+ EE
Sbjct: 59  DPLDLEGPLEADLLPEEGLLEEEE 82



>gi|23200279|pdb|1KQX|A   Chain A, Crystal Structure Of Apo-Crbp From Zebrafish
 gi|23200278|pdb|1KQW|A   Chain A, Crystal Structure Of Holo-Crbp From Zebrafish
          Length = 134

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 80  KEPVDFEQWIEKDLVHTEGQLQNE 103
           KE   ++QWIE DL+H E   Q++
Sbjct: 101 KENRGWKQWIEGDLLHLEIHCQDK 124



>gi|49259285|pdb|1T9G|R   Chain R, Structure Of The Human Mcad:etf Complex
          Length = 333

 Score = 25.0 bits (53), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 75  EKSTSKEPVDFEQWIEKDLVHTE-GQLQNEEIVAHDG 110
           EK++S  PV+  +W+++ L  ++  +L   ++V   G
Sbjct: 186 EKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGG 222



>gi|2781202|pdb|1EFV|A   Chain A, Three-Dimensional Structure Of Human Electron Transfer
           Flavoprotein To 2.1 A Resolution
          Length = 315

 Score = 25.0 bits (53), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 75  EKSTSKEPVDFEQWIEKDLVHTE-GQLQNEEIVAHDG 110
           EK++S  PV+  +W+++ L  ++  +L   ++V   G
Sbjct: 168 EKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGG 204



>gi|16975123|pdb|1JHJ|A   Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN
          Anaphase-Promoting Complex
          Length = 171

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 12 GSEVILATSSDEK-HPPENIIDGNPETFWTTTGMFPQEFIICFHKHVRIERLVI 64
          GS+ + + SS +     + + D N ET+W + G  P    I F +   ++ L I
Sbjct: 25 GSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCI 78



>gi|52696270|pdb|1WNE|A   Chain A, Foot And Mouth Disease Virus Rna-Dependent Rna Polymerase
           In Complex With A Template-Primer Rna
 gi|52695958|pdb|1U09|A   Chain A, Footand Mouth Disease Virus Rna-Dependent Rna Polymerase
          Length = 476

 Score = 24.3 bits (51), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 87  QWIEKDLVHTEGQLQNEEIVAHDG 110
           +WI K LV+TE   +N+ I    G
Sbjct: 272 EWILKTLVNTEHAYENKRITVEGG 295



>gi|48425079|pdb|1NZJ|A   Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
           Yadb Orf
          Length = 298

 Score = 24.3 bits (51), Expect = 8.3
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 91  KDLVHTEGQLQNEEIVAHDGSATYLRFIIVSAFDHFASVHSV 132
           + ++H + +L  E+ + H     +   + V   DHF  V  +
Sbjct: 147 RGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEI 188






  Database: PDB protein database
    Posted date:  Oct 10, 2004 11:42 PM
  Number of letters in database: 4,163,319
  Number of sequences in database:  18,695
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,637
Number of Sequences: 18695
Number of extensions: 21556
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 4,163,319
effective HSP length: 81
effective length of query: 63
effective length of database: 2,649,024
effective search space: 166888512
effective search space used: 166888512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)