RID=1097139622-11513-114981120971.BLASTQ1,

BLASTP 2.2.9 [May-01-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1097139622-11513-114981120971.BLASTQ1
Query= (285 letters)
Database: PDB protein database 18,695 sequences; 4,163,319 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 17 Blast Hits on the Query Sequence

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28373848|pdb|1N2X|B  Chain B, Crystal Structure Analysis ...   196   5e-51 
gi|27065167|pdb|1KA9|H  Chain H, Imidazole Glycerol Phosphat...    30   0.45  
gi|39654646|pdb|1Q7X|A  Chain A, Solution Structure Of The A...    29   0.99  
gi|42543245|pdb|1OZI|A  Chain A, The Alternatively Spliced P...    28   1.3   
gi|493949|pdb|1CPT|   Cytochrome P450-Terp                         28   1.3   
gi|13096252|pdb|1G20|D  Chain D, Mgatp-Bound And Nucleotide-...    28   2.2   
gi|28948567|pdb|1M34|L  Chain L, Nitrogenase Complex From Az...    28   2.2   
gi|10120641|pdb|1EJ0|A  Chain A, Ftsj Rna Methyltransferase ...    28   2.2   
gi|34810173|pdb|1FB5|A  Chain A, Low Resolution Structure Of...    27   3.8   
gi|39654915|pdb|1UFK|A  Chain A, Crystal Structure Of Tt0836       27   3.8   
gi|20150420|pdb|1JFT|A  Chain A, Purine Repressor Mutant-Hyp...    27   3.8   
gi|1942357|pdb|1AQJ|B  Chain B, Structure Of Adenine-N6-Dna-...    26   6.4   
gi|40890008|pdb|1VIO|B  Chain B, Crystal Structure Of Pseudo...    26   6.4   
gi|13399510|pdb|1G38|D  Chain D, Adenine-Specific Methyltran...    26   6.4   
gi|13786681|pdb|1FVO|B  Chain B, Crystal Structure Of Human ...    26   6.4   
gi|3660268|pdb|1PKL|G  Chain G, The Structure Of Leishmania ...    26   6.4   
gi|1942355|pdb|1AQI|B  Chain B, Structure Of Adenine-N6-Dna-...    26   6.4   

Alignments


>gi|28373848|pdb|1N2X|B   Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
 gi|28373847|pdb|1N2X|A   Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
 gi|28373612|pdb|1M6Y|B   Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373611|pdb|1M6Y|A   Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
          Length = 301

 Score =  196 bits (497), Expect = 5e-51
 Identities = 120/288 (41%), Positives = 171/288 (59%), Gaps = 13/288 (4%)

Query: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL 63
           H+PV  +E ++ L      + +D T+G  GH+R ILE   G R+IG+D D E +  A+  
Sbjct: 10  HIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69

Query: 64  ---HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLD 120
                  +++ + ++R     L  LG+E+VDGIL DLGVS++ L   +RGF++++E PLD
Sbjct: 70  LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREEPLD 129

Query: 121 MRMGLEGP-TAKEVVNXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXPIETTTQLAE 179
            R  LE   TA++V+N                  +               P+ TT  L +
Sbjct: 130 XRXDLESEVTAQKVLNELPEEELARIIFEYGE--EKRFARRIARKIVENRPLNTTLDLVK 187

Query: 180 IVRKAVGF----RRAGHPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFH 235
            VR+A+      RR  H A KTFQA+RIYVN EL  LKEFL++A ++L PGGR+VVI+FH
Sbjct: 188 AVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISFH 247

Query: 236 SLEDRVVKRFLRES-GLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282
           SLEDR+VK   R S  L++LT+KP+ PSE+E  +NPRARS +LRAAE+
Sbjct: 248 SLEDRIVKETFRNSKKLRILTEKPVRPSEEEIRENPRARSGRLRAAER 295



>gi|27065167|pdb|1KA9|H   Chain H, Imidazole Glycerol Phosphate Synthase
          Length = 200

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLK 79
          +R   + +D   G    A   LE  G  + + QDP+A   A  L LPG    QG+F  + 
Sbjct: 1  MRMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPG----QGHFGQVM 56

Query: 80 RHLAALG-VERV 90
          R     G VERV
Sbjct: 57 RAFQESGFVERV 68



>gi|39654646|pdb|1Q7X|A   Chain A, Solution Structure Of The Alternatively Spliced Pdz2
          Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
          Length = 108

 Score = 28.9 bits (63), Expect = 0.99
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 7  VPVLYQEALDLLAVRPGGVYVDATL-GGAGHARGILERGGRVIGLD 51
          V VL+ +     +VR GG+YV A +  GA  + G + +G RV+ ++
Sbjct: 26 VTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 71



>gi|42543245|pdb|1OZI|A   Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
          Length = 99

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 7  VPVLYQEALDLLAVRPGGVYVDATL-GGAGHARGILERGGRVIGLD 51
          V VL+ +     +VR GG+YV A +  GA  + G + +G RV+ ++
Sbjct: 21 VTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 66



>gi|493949|pdb|1CPT|    Cytochrome P450-Terp
          Length = 412

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 26  YVDA---TLGGAGHARGILERGGRVIGLDQDPEAVARAK 61
           Y++A    +  AGH       GG +IGL ++PE +A AK
Sbjct: 240 YINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAK 278



>gi|13096252|pdb|1G20|D   Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
           Nitrogenase Protein Complex Between Leu127del-Fe Protein
           And The Mofe Protein
 gi|13096250|pdb|1G20|B   Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
           Nitrogenase Protein Complex Between Leu127del-Fe Protein
           And The Mofe Protein
 gi|27064991|pdb|1FP4|D   Chain D, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
 gi|27064989|pdb|1FP4|B   Chain B, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
 gi|13096260|pdb|1G21|D   Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
           Nitrogenase Protein Complex Between Leu127del-Fe Protein
           And The Mofe Protein
 gi|13096258|pdb|1G21|B   Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
           Nitrogenase Protein Complex Between Leu127del-Fe Protein
           And The Mofe Protein
          Length = 523

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 53  DPEAVARAKGLHL-PGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGF 111
           D + V   K +++ PG     GNFR +KR            +L+++GV    L DP    
Sbjct: 214 DDKVVGSNKKINIVPGFETYLGNFRVIKR------------MLSEMGVGYSLLSDPEEVL 261

Query: 112 SYQKEGPLDMRMGLEGPTAKEV 133
               +G   M  G  G T +E+
Sbjct: 262 DTPADGQFRMYAG--GTTQEEM 281



>gi|28948567|pdb|1M34|L   Chain L, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
 gi|28948565|pdb|1M34|J   Chain J, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
 gi|28948559|pdb|1M34|D   Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
 gi|28948557|pdb|1M34|B   Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
 gi|28948551|pdb|1M1Y|L   Chain L, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
           Protein
 gi|28948549|pdb|1M1Y|J   Chain J, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
           Protein
 gi|28948543|pdb|1M1Y|D   Chain D, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
           Protein
 gi|28948541|pdb|1M1Y|B   Chain B, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
           Protein
 gi|24158925|pdb|1M1N|H   Chain H, Nitrogenase Mofe Protein From Azotobacter Vinelandii
 gi|24158923|pdb|1M1N|F   Chain F, Nitrogenase Mofe Protein From Azotobacter Vinelandii
 gi|24158921|pdb|1M1N|D   Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii
 gi|24158919|pdb|1M1N|B   Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii
 gi|20664284|pdb|1L5H|B   Chain B, Femo-Cofactor Deficient Nitrogenase Mofe Protein
 gi|2098378|pdb|3MIN|D   Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
           Oxidized State
 gi|2098376|pdb|3MIN|B   Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
           Oxidized State
 gi|2098402|pdb|2MIN|D   Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
           Oxidized State
 gi|2098400|pdb|2MIN|B   Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
           Oxidized State
 gi|2624432|pdb|1N2C|D   Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
 gi|2624430|pdb|1N2C|B   Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
           By Adp-Tetrafluoroaluminate
          Length = 522

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 53  DPEAVARAKGLHL-PGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGF 111
           D + V   K +++ PG     GNFR +KR            +L+++GV    L DP    
Sbjct: 213 DDKVVGSNKKINIVPGFETYLGNFRVIKR------------MLSEMGVGYSLLSDPEEVL 260

Query: 112 SYQKEGPLDMRMGLEGPTAKEV 133
               +G   M  G  G T +E+
Sbjct: 261 DTPADGQFRMYAG--GTTQEEM 280



>gi|10120641|pdb|1EJ0|A   Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine, Mercury Derivative
 gi|10120640|pdb|1EIZ|A   Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine
          Length = 180

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 216 LEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLTKKP 258
           LE   +VLAPGG  VV  F         R +R    KV  +KP
Sbjct: 119 LEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKP 161



>gi|34810173|pdb|1FB5|A   Chain A, Low Resolution Structure Of Ovine Ornithine
           Transcarbmoylase In The Unliganded State
          Length = 320

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 18/71 (25%)

Query: 191 GHPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESG 250
           GHP   T Q + + VN       E L   A VL+           S+ D V+ R  ++S 
Sbjct: 72  GHPCFLTTQDIHLGVN-------ESLTDTARVLS-----------SMADAVLARVYKQSD 113

Query: 251 LKVLTKKPLVP 261
           L+ L K+  +P
Sbjct: 114 LETLAKEASIP 124



>gi|39654915|pdb|1UFK|A   Chain A, Crystal Structure Of Tt0836
          Length = 254

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 14  ALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAK 61
           AL  LA  +RPG   +D   G    A    + GG+ +G+D DP  + +A+
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE 159



>gi|20150420|pdb|1JFT|A   Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator Complex
          Length = 340

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDP----EAVARAK 61
           H+P++  +A +  A     V  +A  GG    R ++ERG R IG+   P        R  
Sbjct: 138 HIPMVVMDAGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLA 197

Query: 62  G---------LHLPGLTVVQGNF 75
           G         + +P   +VQG+F
Sbjct: 198 GFMKAMEEAMIKVPESWIVQGDF 220



>gi|1942357|pdb|1AQJ|B   Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942356|pdb|1AQJ|A   Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 210 NALKEFLEQAAEVLAPGGRLVVI---AFHSLED-RVVKRFL-RESGLKVLTKKPLVPSEK 264
           N    FLE+A  +L PGG LV +    +  LED  +++ FL RE    V     + P +K
Sbjct: 141 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKK 200

Query: 265 EAA 267
            +A
Sbjct: 201 VSA 203



>gi|40890008|pdb|1VIO|B   Chain B, Crystal Structure Of Pseudouridylate Synthase
 gi|40890007|pdb|1VIO|A   Chain A, Crystal Structure Of Pseudouridylate Synthase
          Length = 243

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 34  AGHARGILERGGRVIGLDQDPEAVARAKGL--HLPGLTVVQGNFRHLKRHLAALG 86
           A  A GIL RG      +++P   A+ + L  +   LT+ +G +  +KR  AALG
Sbjct: 148 AACAEGILLRG------EKEPTKPAKLEILDDYNVNLTISEGRYHQVKRMFAALG 196



>gi|13399510|pdb|1G38|D   Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
 gi|13399509|pdb|1G38|A   Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
          Length = 393

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 210 NALKEFLEQAAEVLAPGGRLVVI---AFHSLED-RVVKRFL-RESGLKVLTKKPLVPSEK 264
           N    FLE+A  +L PGG LV +    +  LED  +++ FL RE    V     + P +K
Sbjct: 121 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKK 180

Query: 265 EAA 267
            +A
Sbjct: 181 VSA 183



>gi|13786681|pdb|1FVO|B   Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
           Complexed With Carbamoyl Phosphate
 gi|13786680|pdb|1FVO|A   Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
           Complexed With Carbamoyl Phosphate
 gi|13786636|pdb|1EP9|A   Chain A, Human Ornithine Transcarbamylase: Crystallographic
           Insights Into Substrate Recognition And Conformational
           Change
 gi|8569285|pdb|1C9Y|A   Chain A, Human Ornithine Transcarbamylase: Crystallographic
           Insights Into Substrate Recognition And Catalytic
           Mechanism
 gi|6137343|pdb|1OTH|A   Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
           Complexed With N-Phosphonacetyl-L-Ornithine
          Length = 321

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 18/71 (25%)

Query: 191 GHPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESG 250
           GHP   T Q + + VN       E L   A VL+           S+ D V+ R  ++S 
Sbjct: 73  GHPCFLTTQDIHLGVN-------ESLTDTARVLS-----------SMADAVLARVYKQSD 114

Query: 251 LKVLTKKPLVP 261
           L  L K+  +P
Sbjct: 115 LDTLAKEASIP 125



>gi|3660268|pdb|1PKL|G   Chain G, The Structure Of Leishmania Pyruvate Kinase
 gi|3660267|pdb|1PKL|H   Chain H, The Structure Of Leishmania Pyruvate Kinase
 gi|3660266|pdb|1PKL|F   Chain F, The Structure Of Leishmania Pyruvate Kinase
 gi|3660265|pdb|1PKL|E   Chain E, The Structure Of Leishmania Pyruvate Kinase
 gi|3660264|pdb|1PKL|D   Chain D, The Structure Of Leishmania Pyruvate Kinase
 gi|3660263|pdb|1PKL|C   Chain C, The Structure Of Leishmania Pyruvate Kinase
 gi|3660262|pdb|1PKL|B   Chain B, The Structure Of Leishmania Pyruvate Kinase
 gi|3660261|pdb|1PKL|A   Chain A, The Structure Of Leishmania Pyruvate Kinase
          Length = 499

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 43  RGGRVI-GLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVS 100
           R  R+I  +    ++V   KGL   G++V + NF H         +  V    A+LGV+
Sbjct: 20  RAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVN 78



>gi|1942355|pdb|1AQI|B   Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942354|pdb|1AQI|A   Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942411|pdb|2ADM|B   Chain B, Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942410|pdb|2ADM|A   Chain A, Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 210 NALKEFLEQAAEVLAPGGRLVVI---AFHSLED-RVVKRFL-RESGLKVLTKKPLVPSEK 264
           N    FLE+A  +L PGG LV +    +  LED  +++ FL RE    V     + P +K
Sbjct: 141 NLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKK 200

Query: 265 EAA 267
            +A
Sbjct: 201 VSA 203






  Database: PDB protein database
    Posted date:  Oct 6, 2004  1:12 AM
  Number of letters in database: 4,163,319
  Number of sequences in database:  18,695
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,059
Number of Sequences: 18695
Number of extensions: 48987
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 8
length of query: 285
length of database: 4,163,319
effective HSP length: 89
effective length of query: 196
effective length of database: 2,499,464
effective search space: 489894944
effective search space used: 489894944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)