QUERY       : GLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDL : QUERY 
Q8U456      : GLIVRQPYAKWIVEGKKSWEIRKMPTKIRGKIVIISEKKALGTVEIVDVLGPFTPEELSKHENKHLASYEFLKRYSNGKKLYAWVLANPQKFENPIDVEIPNGAQIWVNL : Q8U456
O29197      : ---MREPFASMIVRGEKKWEIRKTNTNIRGEVIILSQGYALGKAKLADVLGPFTVEELLEFKDYHRADEDFLRSYSGGKKLYAWVFEEPEEFEKKVRVKIPRGAQVWVKI : O29197
Q8TXY5      : ---VKPKFANLILDGVKNVEVRRPGTILRERTCIV-----YASSPLCAVLGEVTIEELAEIAELAKASEDELRRYLEGRDAYLITLDGPVRYPNPLPLE----------- : Q8TXY5

            : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101------- :
OrigSeq     : GLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDL : OrigSeq

jalign      : -----HHHHHHHE-----EEEE--------EEEEEE-------EEEEEE----HHHHHHHHHHHHHHHHHHHHHHH----EEEEEE------------------------ : jalign
jfreq       : --EEE---HEEEE----EEEEEE--------EEEE----H---EEEEEE----HHHHHHHHHHHHHHHHHHHHHH-----EHEEEE-----------EE----EEEEE-- : jfreq
jhmm        : ---------EEEEE--EEEEEE--------EEEEE----E-----E--------HHHHHHHHHH-HHHHHHHHHH-----EEEEEE------------------EEEE-- : jhmm
jnet        : --EE---EEEEEE---EEEEEEEEEEE----EEEEE--EEE---EEEEE-----HHHHHHHHHHHHHHHHHHHHHH---EEEEEEE---E--------------EEEE-- : jnet
jpssm       : ------EEEEE-----EEEE--EEEEEE---------EEEEE---E---E-EEEE-----HHHHHHHHHHHHH-HHHHHHH-----EEEEEE------------------ : jpssm

jpred       : -------EEEEEE---EEEEEEE--------EEEE----E----EEEEE-----HHHHHHHHHHHHHHHHHHHHHH----EEEEEE------------------EEEE-- : jpred

Lupas 14    : -------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21    : -------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28    : -------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25     : B-BB-BBBBBBBB-B-BBB-B---B------BBBBB-BBBBB-B-BB--B-BBBBBB-B-B--BB-B---BBB-B--B--BB-BB-BBBB-B---B-B-----B-BBB-B : Jnet_25
Jnet_5      : -------BB-----------B------------------B------------B-B--------------------------B-B----B--------------------- : Jnet_5
Jnet_0      : ----------------------------------------------------------------------------------------B--------------------- : Jnet_0
Jnet Rel    : 77541331777641420753754221304834566301574262223121253067677889999999997238961214411001021125589886599984565599 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
jalign          - Jnet alignment prediction
jfreq           - Jnet PSIBLAST frequency profile prediction
jhmm            - Jnet hmm profile prediction
jnet            - Jnet prediction
jpssm           - Jnet PSIBLAST pssm profile prediction
jpred           - Consensus prediction over all methods

MCoil           - MultiCoil prediction (and dimer and trimer predictions)
Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet prediction of prediction accuracy, ranges from 0 to 9, bigger is better.