BLASTP 2.2.6 [Apr-09-2003]

RID: 1064840857-16737-219306.BLASTQ3

Query= T0192 Spermidime/Spermine Acetyltransferase (SSAT),
human
         (171 letters)


Database: PDB protein database 
           45,671 sequences; 10,828,398 total letters

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14277753|pdb|1I21|A  Chain A, Crystal Structure Of Yeast ...    30   0.48  
gi|14277747|pdb|1I1D|A  Chain A, Crystal Structure Of Yeast ...    30   0.51  
gi|14277743|pdb|1I12|A  Chain A, Crystal Structure Of Saccha...    30   0.54  
gi|34810569|pdb|1Q2Y|A  Chain A, Crystal Structure Of The Pr...    27   4.2   
gi|24158677|pdb|1IRE|B  Chain B, Crystal Structure Of Co-Typ...    26   8.6   

Alignments


>gi|14277753|pdb|1I21|A   Chain A, Crystal Structure Of Yeast Gna1
 gi|14277754|pdb|1I21|B   Chain B, Crystal Structure Of Yeast Gna1
 gi|14277755|pdb|1I21|M   Chain M, Crystal Structure Of Yeast Gna1
 gi|14277756|pdb|1I21|N   Chain N, Crystal Structure Of Yeast Gna1
 gi|14277757|pdb|1I21|X   Chain X, Crystal Structure Of Yeast Gna1
 gi|14277758|pdb|1I21|Y   Chain Y, Crystal Structure Of Yeast Gna1
          Length = 159

 Score = 30.0 bits (66), Expect = 0.48
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 85  IGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRG 144
           +G   ++ED  V S Y+G G+G  ++  L  +     C   + ++ + +E ++ FY++ G
Sbjct: 91  LGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGC---YKIILDCDEKNVKFYEKCG 147

Query: 145 ASDLSSE 151
            S+   E
Sbjct: 148 FSNAGVE 154



>gi|14277747|pdb|1I1D|A   Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
 gi|14277748|pdb|1I1D|B   Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
 gi|14277749|pdb|1I1D|C   Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
 gi|14277750|pdb|1I1D|D   Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
          Length = 161

 Score = 30.0 bits (66), Expect = 0.51
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 85  IGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRG 144
           +G   ++ED  V S Y+G G+G  ++  L  +     C   + ++ + +E ++ FY++ G
Sbjct: 93  LGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGC---YKIILDCDEKNVKFYEKCG 149

Query: 145 ASDLSSE 151
            S+   E
Sbjct: 150 FSNAGVE 156



>gi|14277743|pdb|1I12|A   Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
           Complexed With Accoa
 gi|14277744|pdb|1I12|B   Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
           Complexed With Accoa
 gi|14277745|pdb|1I12|C   Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
           Complexed With Accoa
 gi|14277746|pdb|1I12|D   Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
           Complexed With Accoa
          Length = 160

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 85  IGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRG 144
           +G   ++ED  V S Y+G G+G  ++  L  +     C   + ++ + +E ++ FY++ G
Sbjct: 92  LGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGC---YKIILDCDEKNVKFYEKCG 148

Query: 145 ASDLSSE 151
            S+   E
Sbjct: 149 FSNAGVE 155



>gi|34810569|pdb|1Q2Y|A   Chain A, Crystal Structure Of The Protein Yjcf From Bacillus
           Subtilis: A Member Of The Gcn5-Related
           N-Acetyltransferase Superfamily Fold
          Length = 140

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 91  LEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGASDLSS 150
           LE   V+  +R  G+G  I+K L + A     S     +      ++ FYK+ G   LS 
Sbjct: 68  LERICVLKSHRSAGVGGIIMKALEKAAADGGASG---FILNAQTQAVPFYKKHGYRVLSE 124

Query: 151 EE 152
           +E
Sbjct: 125 KE 126



>gi|24158677|pdb|1IRE|B   Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
           Pseudonocardia Thermophila
          Length = 228

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 40  DLLEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWI 85
           D   +G GE P +   V    +E W PEG      ++YY  ++P+I
Sbjct: 180 DTAGNGLGECPEHLYTVRFTAQELWGPEGDP--NSSVYYDCWEPYI 223






  Database: PDB protein database
    Posted date:  Sep 27, 2003  8:18 PM
  Number of letters in database: 10,828,398
  Number of sequences in database:  45,671
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,046
Number of Sequences: 45671
Number of extensions: 9953
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 1
length of query: 171
length of database: 10,828,398
effective HSP length: 90
effective length of query: 81
effective length of database: 6,718,008
effective search space: 544158648
effective search space used: 544158648
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)