BLASTP 2.2.6 [Apr-09-2003]
RID: 1064840672-25738-3170617.BLASTQ3 Query= T0164 C20, chicken (166 letters) Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports
Query= T0164 C20, chicken (166 letters)
Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|27065117|pdb|1IO0|A Chain A, Crystal Structure Of Tropom... 280 2e-76 gi|33358063|pdb|1PGV|A Chain A, Structural Genomics Of Caen... 102 8e-23 gi|3892017|pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angio... 33 0.067 gi|10835729|pdb|1FPN|3 Chain 3, Human Rhinovirus Serotype 2... 33 0.077 gi|2914473|pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Pro... 27 3.7 Alignments
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|27065117|pdb|1IO0|A Chain A, Crystal Structure Of Tropom... 280 2e-76 gi|33358063|pdb|1PGV|A Chain A, Structural Genomics Of Caen... 102 8e-23 gi|3892017|pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angio... 33 0.067 gi|10835729|pdb|1FPN|3 Chain 3, Human Rhinovirus Serotype 2... 33 0.077 gi|2914473|pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Pro... 27 3.7
>gi|27065117|pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half Length = 185 Score = 280 bits (717), Expect = 2e-76 Identities = 166/166 (100%), Positives = 166/166 (100%) Query: 1 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 60 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND Sbjct: 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 Query: 61 PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 120 PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV Sbjct: 80 PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 Query: 121 EMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL 166 EMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL Sbjct: 140 EMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL 185
>gi|33358063|pdb|1PGV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Tropomodulin C-Terminal Domain Length = 197 Score = 102 bits (254), Expect = 8e-23 Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 1/167 (0%) Query: 1 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 60 N TDVE + R++ +D DL+EVN+NN+ + +++ EA + +++KFS+ T +D Sbjct: 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 Query: 61 PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNN 119 A L E+++ + +L+ LNVESNF++ + L+ + S++E + DNQ Q LGN Sbjct: 85 SEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 Query: 120 VEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRL 166 VEM++ +E+N +LL+ G F R R S A+ N + VR RRL Sbjct: 145 VEMDMMMAIEENESLLRVGISFASMEARHRVSEALERNYERVRLRRL 191
>gi|3892017|pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex gi|3892019|pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex Length = 460 Score = 32.7 bits (73), Expect = 0.067 Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 59 NDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIE 106 +D +LA L N++L+ L++ +N + +GIL LVE+++ L+E Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Score = 26.9 bits (58), Expect = 3.8 Identities = 12/41 (29%), Positives = 24/41 (58%) Query: 66 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIE 106 ++ L+VN L LN+ SN + G+ +++ LQ+ + I+ Sbjct: 47 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87
>gi|10835729|pdb|1FPN|3 Chain 3, Human Rhinovirus Serotype 2 (Hrv2) Length = 237 Score = 32.7 bits (73), Expect = 0.077 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 49 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 108 K+ SI G N + ++ +NNT +N E+ + + L ++ + + +R Sbjct: 32 KEISIPGEVKNLVEICQVDSLVPINNTDTYINSENMY-----SVVLQSSINAPDKIFSIR 86 Query: 109 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 D SQPL + EI++ T L+F + F Sbjct: 87 TDVASQPLATTLIGEISSYFTHWTGSLRFSFMF 119
>gi|2914473|pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Protein gi|2914540|pdb|1AYM|3 Chain 3, Human Rhinovirus 16 Coat Protein At High Resolution gi|5822294|pdb|1QJU|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral Compound Vp61209 gi|5822298|pdb|1QJX|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral Compound Win68934 gi|5822302|pdb|1QJY|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral Compound Vp65099 gi|6980417|pdb|1D3E|3 Chain 3, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed With A Two-Domain Fragment Of Its Cellular Receptor, Intercellular Adhesion Molecule-1 (D1d2-Icam-1). Implications For Virus-Receptor Interactions. Alpha Carbons Only gi|11513467|pdb|1C8M|3 Chain 3, Refined Crystal Structure Of Human Rhinovirus 16 Complexed With Vp63843 (Pleconaril), An Anti-Picornaviral Drug Currently In Clinical Trials Length = 238 Score = 26.9 bits (58), Expect = 3.7 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 66 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTS--LIELRIDNQSQPLGNNVEME 123 L EM +V +TL +N + I + + + Q+ + + +++D S PL + E Sbjct: 43 LIEMCQV-DTLIPINSTQSNIGNVSMYTVTLSPQTKLAEEIFAIKVDIASHPLATTLIGE 101 Query: 124 IANMLEKNTTLLKFGYHF 141 IA+ T L+F + F Sbjct: 102 IASYFTHWTGSLRFSFMF 119
Database: PDB protein database Posted date: Sep 27, 2003 8:18 PM Number of letters in database: 10,828,398 Number of sequences in database: 45,671 Lambda K H 0.313 0.129 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,215 Number of Sequences: 45671 Number of extensions: 6497 Number of successful extensions: 9 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 2 length of query: 166 length of database: 10,828,398 effective HSP length: 90 effective length of query: 76 effective length of database: 6,718,008 effective search space: 510568608 effective search space used: 510568608 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 55 (25.8 bits)
