[ Fold Library: v.1.53.8962 ] [ Sequence Database: v.2003.11.1 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for T0146____

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Thu Nov 6 18:12:46 GMT 2003


Description:T0146____
Remote Host:vitacola.bioinf.uni-leipzig.de
Remote Address:139.18.75.91
E-mail Address:sunny.shiny@gmx.de
Input Format:single
Query Length:325
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Aminotransferase34
Transit peptide25
Mitochondrion23
Transferase22
Disease mutation9
Flavoprotein8
FAD8
Oxidoreductase6

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment c1pj5a_ 14%i.d. 827 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 1.31e-09 1n/a not in SCOP 1.53 PDB header: oxidoreductase. Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;. . PDBTitle: crystal structure of dimethylglycine oxidase of2 arthrobacter globiformis in complex with acetate . - 1pj5 a 0.000 R1D
View Alignment c1ko3a_ 15%i.d. 230 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 0.0473 1n/a Alpha and beta proteins (a+b) Metallo-hydrolase Metallo-hydrolase homol. to d1a7ta_ - - 1ko3 a 0.000 R1D
View Alignment d1egaa1 11%i.d. 179 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.614 10.92 Transit peptide, Mitochondrion, Alpha and beta proteins (a/b) P-loop containing nucleotide triphosphate hydrolases P-loop containing nucleotide triphosphate hydrolases G proteins GTPase Era, N-terminal domain Escherichia coli 1ega a:4-182 0.500 R1D
View Alignment c1ky3a_ 15%i.d. 162 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.35 11.00 Alpha and beta proteins (a/b) P-loop containing nucleotide triphosphate hydrolases P-loop containing nucleotide triphosphate hydrolases homol. to d3raba_ - - 1ky3 a 0.000 R1D
View Alignment c1egaa_ 10%i.d. 292 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.54 10.92 Transit peptide, Mitochondrion, not in SCOP 1.53 PDB header: hydrolase. Chain: A: PDB Molecule:gtp-binding protein era;. . PDBTitle: crystal structure of a widely conserved gtpase era . - 1ega a 0.000 R1D
View Alignment c1ddka_ 9%i.d. 220 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.91 11.00 Alpha and beta proteins (a+b) Metallo-hydrolase Metallo-hydrolase homol. to d1a7ta_ - - 1ddk a 0.000 R1D
View Alignment c1gs5a_ 14%i.d. 258 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.95 0.945
TRANSFERASE 		0.74 Oxidoreductase, Transit peptide, Mitochondrion, Transferase, not in SCOP 1.53 PDB header: kinase. Chain: A: PDB Molecule:acetylglutamate kinase;. . PDBTitle: n-acetyl-l-glutamate kinase from escherichia coli complexed2 with its substrate n-acetylglutamate and its substrate3 analog amppnp . - 1gs5 a 0.000 R1D
View Alignment d1gdoa_ 17%i.d. 238 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.69 0.68
AMINOTRANSFERASE,catalyzes,TRANSFERASE 		0.63 Oxidoreductase, FAD, Transit peptide, Aminotransferase, Flavoprotein, Transferase, Alpha and beta proteins (a+b) N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal nucleophile aminohydrolases (Ntn hydrolases) Class II glutamine amidotransferases Glucosamine 6-phosphate synthase, N-terminal domain Escherichia coli 1gdo a: 0.500 R1D
View Alignment d1cm0a_ 12%i.d. 162 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 4.51 1n/a Alpha and beta proteins (a+b) Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) N-acetyl transferase, NAT Histone acetyltransferase domain of P300/CBP associating factor, PCAF Human (Homo sapiens) 1cm0 a: 0.806 R1D
View Alignment d1mfoa_ 11%i.d. 262 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.62 11.00 Multi-domain proteins (alpha and beta) beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase, class A Mycobacterium fortuitum 1mfo a: 0.723 R1D
View Alignment d1bza__ 14%i.d. 257 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.81 11.00 Multi-domain proteins (alpha and beta) beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase, class A Escherichia coli, TOHO-1 1bza - 0.721 1D
View Alignment c1h3da_ 14%i.d. 288 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.96 0.951
TRANSFERASE 		n/a not in SCOP 1.53 PDB header: transferase. Chain: A: PDB Molecule:atp-phosphoribosyltransferase;. . PDBTitle: structure of the e.coli atp-phosphoribosyltransferase . - 1h3d a 0.000 R1D
View Alignment d1mrg__ 10%i.d. 246 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.17 11.00 Alpha and beta proteins (a+b) Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) Plant cytotoxins alpha-Momorcharin (momordin) Bitter gourd (Momordica charantia) 1mrg - 0.790 R1D
View Alignment d1buea_ 11%i.d. 265 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.29 11.00 Multi-domain proteins (alpha and beta) beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase, class A Enterobacter cloacae, NMC-A carbapenemase 1bue a: 0.947 1D
View Alignment d4blma_ 15%i.d. 256 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.75 0.883
large 		1.00 Multi-domain proteins (alpha and beta) beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase/D-ala carboxypeptidase beta-Lactamase, class A Bacillus licheniformis 4blm a: 0.778 1D
View Alignment c1iq6a_ 13%i.d. 132 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.23 1n/a not in SCOP 1.53 PDB header: lyase. Chain: A: PDB Molecule:(r)-specific enoyl-coa hydratase;. . PDBTitle: (r)-hydratase from a. caviae involved in pha biosynthesis . - 1iq6 a 0.000 R1D
View Alignment c1fmta_ 13%i.d. 308 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 9.09 0.917
ii,TRANSFERASE 		0.77 Transit peptide, Mitochondrion, Transferase, not in SCOP 1.53 PDB header: formyltransferase. Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;. . PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli . - 1fmt a 0.000 R1D
View Alignment c1m61a_ 14%i.d. 259 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 9.23 0.246
severe,recessive,t,autosomal,MUTATION 		n/a Alpha and beta proteins (a+b) SH2-like SH2 domain homol. to d1a81a_ - - 1m61 a 0.000 R1D
View Alignment d1fmta2 12%i.d. 200 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 11.6 0.917
ii,TRANSFERASE 		0.77 Transit peptide, Mitochondrion, Transferase, Alpha and beta proteins (a/b) Formyltransferase Formyltransferase Formyltransferase Methionyl-tRNAfmet formyltransferase Escherichia coli 1fmt a:1-206 0.000 R1D
View Alignment c1eeja_ 13%i.d. 216 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 12.5 11.00 not in SCOP 1.53 PDB header: isomerase. Chain: A: PDB Molecule:thiol:disulfide interchange protein;. . PDBTitle: crystal structure of the protein disulfide bond isomerase,2 dsbc, from escherichia coli . - 1eej a 0.000 R1D