[ Fold Library: v.1.53.8962 ] [ Sequence Database: v.2003.11.1 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for T0134____

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Thu Nov 6 18:10:36 GMT 2003


Description:T0134____
Remote Host:vitacola.bioinf.uni-leipzig.de
Remote Address:139.18.75.91
E-mail Address:sunny.shiny@gmx.de
Input Format:single
Query Length:251
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Receptor8
Signal6
Transmembrane6

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment c1b9ka_ 16%i.d. 237 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.123 11.00 not in SCOP 1.53 PDB header: endocytosis/exocytosis. Chain: A: PDB Molecule:alpha-adaptin appendage domain;. . PDBTitle: alpha-adaptin appendage domain, from clathrin adaptor ap2 . - 1b9k a 0.000 1D
View Alignment d1pdkb_ 18%i.d. 149 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.729 0.759
SIGNAL 		0.74 Signal, All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Bacterial adhesins Pilus subunits PapK pilus subunit Escherichia coli 1pdk b: 0.901 R1D
View Alignment d6prch1 19%i.d. 222 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 1.08 0.961
TRANSMEMBRANE 		0.83 Transmembrane, All beta proteins Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre Rhodopseudomonas viridis 6prc h:37-258 0.000 R1D
View Alignment d1i16__ 15%i.d. 130 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.53 11.00 All beta proteins PDZ domain-like PDZ domain-like Interleukin 16 Interleukin 16 Human (Homo sapiens) 1i16 - 1.000 R1D
View Alignment d1wba__ 16%i.d. 171 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.03 10.85 Signal, All beta proteins beta-Trefoil STI-like Kunitz (STI) inhibitors Winged bean albumin 1 Goa bean (Psophocarpus tetragonolobus) 1wba - 0.569 R1D
View Alignment d1obwa_ 22%i.d. 175 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.05 0.863
binds 		1.00 All beta proteins OB-fold Inorganic pyrophosphatase Inorganic pyrophosphatase Inorganic pyrophosphatase Escherichia coli 1obw a: 0.702 R1D
View Alignment c1e42a_ 13%i.d. 233 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.42 1n/a not in SCOP 1.53 PDB header: endocytosis. Chain: A: PDB Molecule:beta2-adaptin;. . PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 . - 1e42 a 0.000 1D
View Alignment d1wioa2 18%i.d. 113 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.42 0.857
SIGNAL,membrane,TRANSMEMBRANE 		0.76 Signal, Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) CD4 Human (Homo sapiens) 1wio a:179-291 0.423 3D
View Alignment d1kacb_ 10%i.d. 124 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.8 0.635
RECEPTOR,SIGNAL,membrane,TRANSMEMBRANE 		0.70 Receptor, Transmembrane, Signal, All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Coxsackie virus and adenovirus receptor (Car), domain 1 Human (Homo sapiens) 1kac b: 0.400 3D
View Alignment d1avwb_ 15%i.d. 171 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 4.26 0.946
SIGNAL 		0.85 Signal, All beta proteins beta-Trefoil STI-like Kunitz (STI) inhibitors Soybean trypsin inhibitor Soybean (Glycine max) 1avw b: 0.652 1D
View Alignment d1b9ma2 16%i.d. 135 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 4.9 0.896
binds 		1.00 All beta proteins OB-fold C-terminal domain of molybdate-dependent transcriptional regulator ModE C-terminal domain of molybdate-dependent transcriptional regulator ModE C-terminal domain of molybdate-dependent transcriptional regulator ModE Escherichia coli 1b9m a:127-262 0.500 1D
View Alignment d1a8l_2 15%i.d. 107 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.65 10.82 Transmembrane, Signal, Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like Protein disulfide isomerase Protein disulfide isomerase Pyrococcus furiosus 1a8l 120-226 0.500 R1D
View Alignment d1pama2 18%i.d. 104 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.93 0.867
binds,SIGNAL 		0.83 Signal, All beta proteins Prealbumin-like Starch-binding domain Starch-binding domain Cyclodextrin glycosyltransferase, C-terminal domain Alkalophilic bacillus, sp. 1011 1pam a:583-686 0.785 R1D
View Alignment d1erv__ 20%i.d. 105 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.05 10.85 Transmembrane, Signal, Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like Thioltransferase Thioredoxin Human (Homo sapiens) 1erv - 0.500 R1D
View Alignment d1a3wa1 20%i.d. 99 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.33 11.00 All beta proteins Pyruvate kinase beta-barrel domain Pyruvate kinase beta-barrel domain Pyruvate kinase beta-barrel domain Pyruvate kinase Baker's yeast (Saccharomyces cerevisiae) 1a3w a:88-188 0.968 R1D
View Alignment d1ebma2 19%i.d. 124 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.38 1n/a Alpha and beta proteins (a+b) TBP-like TATA-box binding protein-like DNA repair glycosylase, N-terminal domain 8-oxoguanine glycosylase Human (Homo sapiens) 1ebm a:9-135 0.853 3D
View Alignment d1kb5b_ 24%i.d. 117 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7 0.562
RECEPTOR,SIGNAL 		0.42 Receptor, Signal, All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain 1kb5 b: 0.879 R1D
View Alignment d1f13a3 19%i.d. 101 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.45 11.00 All beta proteins Immunoglobulin-like beta-sandwich Transglutaminase Transglutaminase Coagulation factor XIII, two C-terminal domains Human (Homo sapiens), blood 1f13 a:628-728 0.000 3D
View Alignment c1lvxa_ 23%i.d. 74 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.77 11.00 All alpha proteins Binding domain of Skn-1 Binding domain of Skn-1 homol. to d1sknp_ - - 1lvx a 0.000 R1D
View Alignment c2fcba_ 10%i.d. 173 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.87 0.85
RECEPTOR,SIGNAL,membrane,TRANSMEMBRANE 		0.57 Receptor, Transmembrane, Signal, not in SCOP 1.53 PDB header: immune system. Chain: A: PDB Molecule:fc gamma riib;. . PDBTitle: human fc gamma receptor iib ectodomain (cd32) . - 2fcb a 0.000 1D