The Fitted Structure

The fitted mobile structure may be written to a file in PDB format using the WRITE command:

   WRITE fitted.pdb

If the first character of the filename is a pipe character ($\mid$), then the results will be piped into the specified program. For example:

   WRITE |less

will cause the coordinates to be displayed on the screen using the less pager program.

The reference set may also be written:

   WRITE REFERENCE ref_fitted.pdb

(only the three letters `REF' of the REFERENCE parameter are required). This is only useful if the CENTRE command has been used (see below).