[ Fold Library: v.1.53.8815 ] [ Sequence Database: v.2003.9.16 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for T0160____

Disclaimer and Terms of Use


Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

[ Download these results ] [ Renew these results ]
Job Submitted on Tue Sep 30 13:25:51 BST 2003


Description:T0160____
Remote Host:mirinda.bioinf.uni-leipzig.de
Remote Address:139.18.75.94
E-mail Address:mai00fti@studserv.uni-leipzig.de
Input Format:single
Query Length:125
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Sperm37
Cytoskeleton29
Acetylation25
Multigene family20
Synaptosome15
Synapse12
Transmembrane6

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment d1mspa_ 19%i.d. 124 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 1.83e-08 6.14e-06
axially,substructure,crawling,villipoda,pseudopod  * 		0.03 Synaptosome, Synapse, Cytoskeleton, Multigene family, Acetylation, Sperm, Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich PapD-like Major sperm protein, alpha isoform (recombinant), ph 4.6 Major sperm protein, alpha isoform (recombinant), ph 4.6 Pig roundworm (Ascaris suum) 1msp a: 0.922 1D
View Alignment c1m1sa_ 23%i.d. 107 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 0.0155 1n/a not in SCOP 1.53 PDB header: structural genomics, unknown function. Chain: A: PDB Molecule:wr4;. . PDBTitle: structure of wr4, a c.elegans msp family member . - 1m1s a 0.000 R1D
View Alignment d1quna1 12%i.d. 121 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 4.41 11.00 All beta proteins Immunoglobulin-like beta-sandwich PapD-like Pilus chaperone Periplasmic chaperone FimC Escherichia coli 1qun a:1-121 0.902 3D
View Alignment d1qpxa1 17%i.d. 115 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.49 11.00 All beta proteins Immunoglobulin-like beta-sandwich PapD-like Pilus chaperone Pilus chaperone PapD, N-domain Escherichia coli 1qpx a:1-124 0.900 3D
View Alignment c1iu1a_ 15%i.d. 120 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 17 11.00 not in SCOP 1.53 PDB header: endocytosis/exocytosis. Chain: A: PDB Molecule:gamma1-adaptin;. . PDBTitle: crystal structure of human gamma1-adaptin ear domain . - 1iu1 a 0.000 R1D
View Alignment d1fnf_3 18%i.d. 89 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 23.1 0.916
forms 		0.97 Transmembrane, Multigene family, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Fibronectin, different Fn3 modules Human (Homo sapiens) 1fnf 1327-1415 0.500 3D
View Alignment d1qr4a2 15%i.d. 88 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 23.6 0.823
central,forms 		0.98 Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Tenascin, a Fn3 repeat Human (Homo sapiens) 1qr4 a:88-175 0.500 3D
View Alignment d1qunb2 10%i.d. 121 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 24.9 11.00 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Bacterial adhesins Pilus subunits Mannose-specific adhesin FimH Escherichia coli 1qun b:159-279 0.974 R1D
View Alignment c1k5xl_ 19%i.d. 118 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 25.4 0.913
MULTIGENE 		1.00 not in SCOP 1.53 PDB header: ribosome. Chain: L: PDB Molecule:40s ribosomal protein s23;. . PDBTitle: structure of the translating 80s ribosome from yeast,2 obtained by docking atomic models for rna and protein3 components into a 15a cryo-em map. this file 1k5x contains4 the 40s ribosomal subunit, the p-site bound trna and the5 mrna codon. the file 1k5y contains the 60s ribosomal6 subunit. . - 1k5x l 0.000 R1D
View Alignment d1qr4a1 16%i.d. 87 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 25.7 0.823
central,forms 		0.96 Transmembrane, Multigene family, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Tenascin, a Fn3 repeat Human (Homo sapiens) 1qr4 a:1-87 0.500 3D
View Alignment d1bqua2 9%i.d. 113 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 26.1 10.97 Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Cytokyne receptor gp130 cytokine-binding domains Human (Homo sapiens) 1bqu a:100-214 0.500 1D
View Alignment d1eerb2 19%i.d. 104 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 26.3 1n/a All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Erythropoietin (EPO) receptor Human (Homo sapiens) 1eer b:117-220 0.500 3D
View Alignment d1vcaa1 12%i.d. 109 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 26.8 1n/a All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C2 set domains Second domain of vascular cell adhesion molecule-1 (VCAM-1) Human (Homo sapiens) 1vca a:91-199 0.500 3D
View Alignment d1fnf_1 18%i.d. 94 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 27.2 0.916
forms 		0.97 Transmembrane, Multigene family, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Fibronectin, different Fn3 modules Human (Homo sapiens) 1fnf 1142-1235 0.500 R1D
View Alignment d1ten__ 15%i.d. 89 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 28.1 0.882
central 		0.97 Multigene family, Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Tenascin, a Fn3 repeat Human (Homo sapiens) 1ten - 0.500 1D
View Alignment d1fna__ 13%i.d. 91 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 28.8 0.916
forms 		0.98 Transmembrane, All beta proteins Immunoglobulin-like beta-sandwich Fibronectin type III Fibronectin type III Fibronectin, different Fn3 modules Human (Homo sapiens) 1fna - 0.500 R1D
View Alignment c1ifra_ 11%i.d. 113 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 30.3 0.824
filament 		1.00 not in SCOP 1.53 PDB header: immune system. Chain: A: PDB Molecule:lamin a/c;. . PDBTitle: structure of lamin a/c globular domain . - 1ifr a 0.000 1D
View Alignment c1m42a_ 15%i.d. 102 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 31 1n/a not in SCOP 1.53 PDB header: metal binding protein. Chain: A: PDB Molecule:copper resistance protein c;. . PDBTitle: solution structure of apocopc from pseudomonas syringae . - 1m42 a 0.000 R1D
View Alignment d1f13a2 12%i.d. 112 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 31.7 0.849
forms,ACETYLATION 		0.95 Acetylation, All beta proteins Immunoglobulin-like beta-sandwich Transglutaminase Transglutaminase Coagulation factor XIII, two C-terminal domains Human (Homo sapiens), blood 1f13 a:516-627 0.000 R1D
View Alignment c1edya_ 11%i.d. 134 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 31.8 0.794
molecular 		1.00 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f Receptor domain from alpha-2-macroglobulin homol. to d1ayoa_ - - 1edy a 0.000 R1D