[ Fold Library: v.1.53.8815 ] [ Sequence Database: v.2003.9.16 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for T0133____

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Tue Sep 30 13:25:14 BST 2003


Description:T0133____
Remote Host:mirinda.bioinf.uni-leipzig.de
Remote Address:139.18.75.94
E-mail Address:mai00fti@studserv.uni-leipzig.de
Input Format:single
Query Length:312
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Actin-binding10
Cytoskeleton9
Transmembrane6

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment c1hg5a_ 14%i.d. 263 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 1.22e-13 0.891
plasma,membrane 		0.00 Cytoskeleton, Actin-binding, Transmembrane, not in SCOP 1.53 PDB header: endocytosis. Chain: A: PDB Molecule:clathrin assembly protein short form;. . PDBTitle: calm-n n-terminal domain of clathrin assembly lymphoid2 myeloid leukaemia protein, inositol(1,2,3,4,5,6)p6 complex . - 1hg5 a 0.000 R1D
View Alignment c1hx8a_ 15%i.d. 270 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 0.0027 0.891
plasma,membrane 		0.03 Cytoskeleton, Actin-binding, Transmembrane, not in SCOP 1.53 PDB header: endocytosis/exocytosis. Chain: A: PDB Molecule:synapse-enriched clathrin adaptor protein lap;. . PDBTitle: crystal structure of n-terminal domain of drosophila ap180 . - 1hx8 a 0.000 R1D
View Alignment d1eyha_ 15%i.d. 144 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 0.0217 10.00 Cytoskeleton, Actin-binding, Transmembrane, All alpha proteins alpha-alpha superhelix ENTH/VHS domain ENTH domain Epsin 1 Rat (Rattus norvegicus) 1eyh a: 0.939 1D
View Alignment d1elka_ 11%i.d. 153 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.99 1n/a All alpha proteins alpha-alpha superhelix ENTH/VHS domain VHS domain Tom1 protein Human (Homo sapiens) 1elk a: 0.938 3D
View Alignment c1kv6a_ 22%i.d. 222 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.23 1n/a All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain homol. to d3erda_ - - 1kv6 a 0.000 1D
View Alignment d1dvpa1 14%i.d. 145 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.68 1n/a All alpha proteins alpha-alpha superhelix ENTH/VHS domain VHS domain Hrs Fruit fly (Drosophila melanogaster) 1dvp a:1-145 0.944 3D
View Alignment c1jkw__ 13%i.d. 277 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.15 0.95
cell 		1.00 not in SCOP 1.53 PDB header: cell division. Chain:NULL;: PDB Molecule:cyclin h; . PDBTitle: structure of cyclin mcs2 . - - 1jkw - 0.000 R1D
View Alignment d1d8da_ 12%i.d. 323 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7 0.672
c-terminus 		0.97 Transmembrane, All alpha proteins alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Protein farnesyltransferase alpha-subunit Rat (Rattus norvegicus) 1d8d a: 0.000 R1D
View Alignment c1bed__ 12%i.d. 181 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.08 0.742
required,formation 		1.00 Alpha and beta proteins (a/b) Thioredoxin fold Thioredoxin-like homol. to d1fvka2 - - 1bed - 0.000 R1D
View Alignment c1ekua_ 16%i.d. 252 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.59 11.00 not in SCOP 1.53 PDB header: immune system. Chain: A: PDB Molecule:interferon gamma;. . PDBTitle: crystal structure of a biologically active single chain2 mutant of human ifn-gamma . - 1eku a 0.000 1D
View Alignment d1nf1a_ 13%i.d. 260 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.32 11.00 All alpha proteins GTPase activation domain, GAP GTPase activation domain, GAP p120GAP domain-like GAP related domain of neurofibromin Human (Homo sapiens) 1nf1 a: 0.892 3D
View Alignment c1n81a_ 15%i.d. 186 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.1 1n/a not in SCOP 1.53 PDB header: unknown function. Chain: A: PDB Molecule:plasmodium falciparum gamete antigen 27/25;. . PDBTitle: crystal structure of pfg27 from plasmodium falciparum . - 1n81 a 0.000 R1D
View Alignment c1lrba_ 11%i.d. 257 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.3 0.89
cellular 		1.00 not in SCOP 1.53 PDB header: . PDB COMPND:. - - - 1lrb a 0.000 R1D
View Alignment c1pk5a_ 13%i.d. 242 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.3 1n/a All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain homol. to d1dkfa_ - - 1pk5 a 0.000 R1D
View Alignment c1qkma_ 14%i.d. 230 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.3 11.00 All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain homol. to d3erda_ - - 1qkm a 0.000 1D
View Alignment d1uby__ 12%i.d. 348 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 12.3 10.97 Transmembrane, All alpha proteins Terpenoid synthases Terpenoid synthases Isoprenyl diphosphate synthases Farnesyl diphosphate synthase Chicken (Gallus gallus) 1uby - 0.707 R1D
View Alignment d1wer__ 10%i.d. 324 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 12.7 0.95
cell 		1.00 All alpha proteins GTPase activation domain, GAP GTPase activation domain, GAP p120GAP domain-like p120GAP domain Human (Homo sapiens) 1wer - 0.575 R1D
View Alignment d1by1a_ 14%i.d. 209 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 13.2 11.00 All alpha proteins DBL homology domain DBL homology domain DBL homology domain beta-pix Human (Homo sapiens) 1by1 a: 0.000 3D
View Alignment c1av1a_ 15%i.d. 201 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 13.7 0.754
accumulation,plasma,formation 		1.00 not in SCOP 1.53 PDB header: lipid transport. Chain: A: PDB Molecule:apolipoprotein a-i;. . PDBTitle: crystal structure of human apolipoprotein a-i . - 1av1 a 0.000 R1D
View Alignment d1exaa_ 11%i.d. 236 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 14.6 11.00 All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Retinoic acid receptor gamma (RAR-gamma) Human (Homo sapiens) 1exa a: 0.797 1D