BLASTP 2.2.6 [Apr-09-2003]
RID: 1065022955-655-2250801.BLASTQ3 Query= T0166 Transcriptional regulator SLYA, E. faecalis (150 letters) Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports Score E Sequences producing significant alignments: (bits) Value pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcript... 280 2e-76 pdb|1HW1|A Chain A, The Fadr-Dna Complex: Transcriptional C... 33 0.045 pdb|1E2X|A Chain A, Fadr, Fatty Acid Responsive Transcripti... 33 0.045 pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iro... 32 0.078 pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activat... 32 0.078 pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Repr... 32 0.078 pdb|1G3S|A Chain A, Cys102ser Dtxr >gi|16975070|pdb|1G3T|A ... 32 0.10 pdb|1F5T|A Chain A, Diphtheria Tox Repressor (C102d Mutant)... 32 0.13 pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complexe... 32 0.13 pdb|1FWZ|A Chain A, Glu20ala Dtxr 32 0.13 pdb|1G3Y|A Chain A, Arg80ala Dtxr 32 0.13 pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena >gi|77... 29 0.66 pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin F... 29 0.66 pdb|1FLV| Flavodoxin >gi|999876|pdb|1RCF| Flavodoxin Comp... 29 0.86 pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena >gi|30749... 28 1.1 pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena 28 1.1 pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A Tyrosin... 28 1.1 pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent... 28 1.1 pdb|1B1B|A Chain A, Iron Dependent Regulator 28 1.1 pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Mar... 28 1.5 pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin ... 26 7.3 pdb|1KU9|A Chain A, X-Ray Structure Of A Methanococcus Jann... 25 9.5 pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Al... 25 9.5 Alignments >pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcriptional Regulator Slya pdb|1LJ9|B Chain B, The Crystal Structure Of The Transcriptional Regulator Slya Length = 144 Score = 280 bits (716), Expect = 2e-76 Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 2 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA 61 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA Sbjct: 1 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA 60 Query: 62 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI 121 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI Sbjct: 61 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI 120 Query: 122 SQLADYLVRMRKNVSEDWEFVKKG 145 SQLADYLVRMRKNVSEDWEFVKKG Sbjct: 121 SQLADYLVRMRKNVSEDWEFVKKG 144 >pdb|1HW1|A Chain A, The Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Escherichia Coli pdb|1HW1|B Chain B, The Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Escherichia Coli pdb|1HW2|A Chain A, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Echerichia Coli pdb|1HW2|B Chain B, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Echerichia Coli Length = 239 Score = 33.1 bits (74), Expect = 0.045 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 43 PGII---QEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 99 PG I + +++ELI V RTT ++RL G++ Q K+ + T G N+ Sbjct: 27 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH-GKPTKVNNFWET-SGLNILE 84 Query: 100 IIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVS 136 + R L + QL D L+ +R N+S Sbjct: 85 TLAR------------LDHESVPQLIDNLLSVRTNIS 109 >pdb|1E2X|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli pdb|1H9G|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli, In Complex With Myristoyl-Coa pdb|1H9T|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli In Complex With Fadb Operator pdb|1H9T|B Chain B, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli In Complex With Fadb Operator Length = 243 Score = 33.1 bits (74), Expect = 0.045 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 43 PGII---QEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 99 PG I + +++ELI V RTT ++RL G++ Q K+ + T G N+ Sbjct: 31 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH-GKPTKVNNFWET-SGLNILE 88 Query: 100 IIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVS 136 + R L + QL D L+ +R N+S Sbjct: 89 TLAR------------LDHESVPQLIDNLLSVRTNIS 113 >pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iron-Regulation Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor; Chain: A, B; Synonym: Dtxr; Engineered: Yes pdb|1DPR|B Chain B, Diphtheria, Virulence, Dna-Binding, Iron-Regulation Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor; Chain: A, B; Synonym: Dtxr; Engineered: Yes pdb|2DTR| Structure Of Diphtheria Toxin Repressor pdb|1BI2|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI2|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor Length = 226 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 113 >pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain Length = 225 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 1 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 60 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 61 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 112 >pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI3|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI3|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI0| Structure Of Apo- And Holo-Diphtheria Toxin Repressor Length = 226 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEAXRWEHVMSDEVE 113 >pdb|1G3S|A Chain A, Cys102ser Dtxr pdb|1G3T|A Chain A, Cys102ser Dtxr pdb|1G3T|B Chain B, Cys102ser Dtxr pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr Length = 226 Score = 32.0 bits (71), Expect = 0.10 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEASRWEHVMSDEVE 113 >pdb|1F5T|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence Length = 121 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEADRWEHVMSDEVE 113 >pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEADRWEHVMSDEVE 113 >pdb|1FWZ|A Chain A, Glu20ala Dtxr Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEAEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEAXRWEHVMSDEVE 113 >pdb|1G3Y|A Chain A, Arg80ala Dtxr Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHALAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 113 >pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena Length = 169 Score = 29.3 bits (64), Expect = 0.66 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 82 NKKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADYLVRM----RKNVS 136 +KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY + N+ Sbjct: 1 SKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTANIG 60 Query: 137 E---DWE 140 E DWE Sbjct: 61 ELQSDWE 67 >pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin From Boar Length = 175 Score = 29.3 bits (64), Expect = 0.66 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 37 VRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE 70 V +C+ GII+E I +L K+DR R ++E Sbjct: 138 VEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQE 171 >pdb|1FLV| Flavodoxin pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide (Fmn) Length = 169 Score = 28.9 bits (63), Expect = 0.86 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 82 NKKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 +KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 1 SKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47 >pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena pdb|1OBO|B Chain B, W57l Flavodoxin From Anabaena Length = 169 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47 >pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena Length = 169 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47 >pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A TyrosineTRYPTOPHAN AROMATIC GATE LEADS TO A COMPACT FOLD pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And Of A Cation-Pi Interaction In Apoflavodoxin Length = 168 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 1 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 46 >pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|B Chain B, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|C Chain C, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|D Chain D, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis Length = 230 Score = 28.5 bits (62), Expect = 1.1 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 25 ELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 82 EL T YL + E G+ ++ +IAE + T ++ + R+E G + D Sbjct: 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD--- 59 Query: 83 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQ--GLSEVEISQLADYLVRMRKNVSEDWE 140 + + TEKG+ + ++R+++ + ++ + GL E+ A R +SED E Sbjct: 60 ---RHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEA---CRWEHVMSEDVE 113 >pdb|1B1B|A Chain A, Iron Dependent Regulator Length = 140 Score = 28.5 bits (62), Expect = 1.1 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 25 ELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 82 EL T YL + E G+ ++ +IAE + T ++ + R+E G + D Sbjct: 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD--- 59 Query: 83 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQ--GLSEVEISQLADYLVRMRKNVSEDWE 140 + + TEKG+ + ++R+++ + ++ + GL E+ A R +SED E Sbjct: 60 ---RHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEA---CRWEHVMSEDVE 113 >pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Maritima Iclr pdb|1MKM|B Chain B, Crystal Structure Of The Thermotoga Maritima Iclr Length = 249 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 39 VCENPGIIQ-EKIAELIKVDRTTAARAIKRLEEQGFIYRQED 79 + +NPG + +IAE + + A + + LEE+GF+ R++D Sbjct: 17 IVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD 58 >pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. Length = 181 Score = 25.8 bits (55), Expect = 7.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 38 RVCENPGIIQEKIAELIKVDRTTAAR 63 ++CE GI ++ I +L K DR AR Sbjct: 155 KLCEAHGITRDNIIDLTKTDRCLQAR 180 >pdb|1KU9|A Chain A, X-Ray Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphylococcus Aureus pdb|1KU9|B Chain B, X-Ray Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphylococcus Aureus Length = 152 Score = 25.4 bits (54), Expect = 9.5 Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 34 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFI 74 +Y + + + I E +K+ + + ++K+LEE GF+ Sbjct: 31 VYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFV 71 >pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1 Length = 159 Score = 25.4 bits (54), Expect = 9.5 Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 37 VRVCENPGIIQEKIAELIKVDR 58 V++ + GI++E I +L K+DR Sbjct: 132 VKIVQKRGIVKENIIDLTKIDR 153
Query= T0166 Transcriptional regulator SLYA, E. faecalis (150 letters)
Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcript... 280 2e-76 pdb|1HW1|A Chain A, The Fadr-Dna Complex: Transcriptional C... 33 0.045 pdb|1E2X|A Chain A, Fadr, Fatty Acid Responsive Transcripti... 33 0.045 pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iro... 32 0.078 pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activat... 32 0.078 pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Repr... 32 0.078 pdb|1G3S|A Chain A, Cys102ser Dtxr >gi|16975070|pdb|1G3T|A ... 32 0.10 pdb|1F5T|A Chain A, Diphtheria Tox Repressor (C102d Mutant)... 32 0.13 pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complexe... 32 0.13 pdb|1FWZ|A Chain A, Glu20ala Dtxr 32 0.13 pdb|1G3Y|A Chain A, Arg80ala Dtxr 32 0.13 pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena >gi|77... 29 0.66 pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin F... 29 0.66 pdb|1FLV| Flavodoxin >gi|999876|pdb|1RCF| Flavodoxin Comp... 29 0.86 pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena >gi|30749... 28 1.1 pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena 28 1.1 pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A Tyrosin... 28 1.1 pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent... 28 1.1 pdb|1B1B|A Chain A, Iron Dependent Regulator 28 1.1 pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Mar... 28 1.5 pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin ... 26 7.3 pdb|1KU9|A Chain A, X-Ray Structure Of A Methanococcus Jann... 25 9.5 pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Al... 25 9.5
>pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcriptional Regulator Slya pdb|1LJ9|B Chain B, The Crystal Structure Of The Transcriptional Regulator Slya Length = 144 Score = 280 bits (716), Expect = 2e-76 Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 2 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA 61 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA Sbjct: 1 TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTA 60 Query: 62 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI 121 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI Sbjct: 61 ARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEI 120 Query: 122 SQLADYLVRMRKNVSEDWEFVKKG 145 SQLADYLVRMRKNVSEDWEFVKKG Sbjct: 121 SQLADYLVRMRKNVSEDWEFVKKG 144
>pdb|1HW1|A Chain A, The Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Escherichia Coli pdb|1HW1|B Chain B, The Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Escherichia Coli pdb|1HW2|A Chain A, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Echerichia Coli pdb|1HW2|B Chain B, Fadr-Dna Complex: Transcriptional Control Of Fatty Acid Metabolism In Echerichia Coli Length = 239 Score = 33.1 bits (74), Expect = 0.045 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 43 PGII---QEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 99 PG I + +++ELI V RTT ++RL G++ Q K+ + T G N+ Sbjct: 27 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH-GKPTKVNNFWET-SGLNILE 84 Query: 100 IIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVS 136 + R L + QL D L+ +R N+S Sbjct: 85 TLAR------------LDHESVPQLIDNLLSVRTNIS 109
>pdb|1E2X|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli pdb|1H9G|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli, In Complex With Myristoyl-Coa pdb|1H9T|A Chain A, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli In Complex With Fadb Operator pdb|1H9T|B Chain B, Fadr, Fatty Acid Responsive Transcription Factor From E. Coli In Complex With Fadb Operator Length = 243 Score = 33.1 bits (74), Expect = 0.045 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 43 PGII---QEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 99 PG I + +++ELI V RTT ++RL G++ Q K+ + T G N+ Sbjct: 31 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH-GKPTKVNNFWET-SGLNILE 88 Query: 100 IIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVS 136 + R L + QL D L+ +R N+S Sbjct: 89 TLAR------------LDHESVPQLIDNLLSVRTNIS 113
>pdb|1DPR|A Chain A, Diphtheria, Virulence, Dna-Binding, Iron-Regulation Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor; Chain: A, B; Synonym: Dtxr; Engineered: Yes pdb|1DPR|B Chain B, Diphtheria, Virulence, Dna-Binding, Iron-Regulation Repressor Mol_id: 1; Molecule: Diphtheria Tox Repressor; Chain: A, B; Synonym: Dtxr; Engineered: Yes pdb|2DTR| Structure Of Diphtheria Toxin Repressor pdb|1BI2|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI2|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor Length = 226 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 113
>pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin Repressor-Dna Complex Reveals A Metal Binding Sh-Like Domain Length = 225 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 1 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 60 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 61 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 112
>pdb|1BI1| Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI3|A Chain A, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI3|B Chain B, Structure Of Apo- And Holo-Diphtheria Toxin Repressor pdb|1BI0| Structure Of Apo- And Holo-Diphtheria Toxin Repressor Length = 226 Score = 32.3 bits (72), Expect = 0.078 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEAXRWEHVMSDEVE 113
>pdb|1G3S|A Chain A, Cys102ser Dtxr pdb|1G3T|A Chain A, Cys102ser Dtxr pdb|1G3T|B Chain B, Cys102ser Dtxr pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr Length = 226 Score = 32.0 bits (71), Expect = 0.10 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEASRWEHVMSDEVE 113
>pdb|1F5T|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence pdb|1F5T|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And Dtxr Consensus Binding Sequence Length = 121 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEADRWEHVMSDEVE 113
>pdb|2TDX| Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant) Complexed With Nickel And With Tox Dna Operator Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEADRWEHVMSDEVE 113
>pdb|1FWZ|A Chain A, Glu20ala Dtxr Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEAEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R+++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHRLAERL-LTDIIGLDINKVHDEAXRWEHVMSDEVE 113
>pdb|1G3Y|A Chain A, Arg80ala Dtxr Length = 226 Score = 31.6 bits (70), Expect = 0.13 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 24 KELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS 81 K+L T YL + E G+ ++ +IAE ++ T ++ + R+E G + D S Sbjct: 2 KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRS 61 Query: 82 NKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 140 + T G+ + ++R++ + ++ L + ++I+++ D R +S++ E Sbjct: 62 ------LQMTPTGRTLATAVMRKHALAERL-LTDIIGLDINKVHDEACRWEHVMSDEVE 113
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena Length = 169 Score = 29.3 bits (64), Expect = 0.66 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 82 NKKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADYLVRM----RKNVS 136 +KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY + N+ Sbjct: 1 SKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTANIG 60 Query: 137 E---DWE 140 E DWE Sbjct: 61 ELQSDWE 67
>pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin From Boar Length = 175 Score = 29.3 bits (64), Expect = 0.66 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 37 VRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE 70 V +C+ GII+E I +L K+DR R ++E Sbjct: 138 VEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQE 171
>pdb|1FLV| Flavodoxin pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide (Fmn) Length = 169 Score = 28.9 bits (63), Expect = 0.86 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 82 NKKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 +KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 1 SKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47
>pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena pdb|1OBO|B Chain B, W57l Flavodoxin From Anabaena Length = 169 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47
>pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena Length = 169 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 47
>pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A TyrosineTRYPTOPHAN AROMATIC GATE LEADS TO A COMPACT FOLD pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And Of A Cation-Pi Interaction In Apoflavodoxin Length = 168 Score = 28.5 bits (62), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 83 KKIKRIYATEKGKNVYPI-IVRENQHSNQVALQGLSEVEISQLADY 127 KKI Y T+ GK I+R+ ++ V L +S+ E++ L DY Sbjct: 1 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDY 46
>pdb|1FX7|A Chain A, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|B Chain B, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|C Chain C, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis pdb|1FX7|D Chain D, Crystal Structure Of The Iron-Dependent Regulator (Ider) From Mycobacterium Tuberculosis Length = 230 Score = 28.5 bits (62), Expect = 1.1 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 25 ELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 82 EL T YL + E G+ ++ +IAE + T ++ + R+E G + D Sbjct: 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD--- 59 Query: 83 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQ--GLSEVEISQLADYLVRMRKNVSEDWE 140 + + TEKG+ + ++R+++ + ++ + GL E+ A R +SED E Sbjct: 60 ---RHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEA---CRWEHVMSEDVE 113
>pdb|1B1B|A Chain A, Iron Dependent Regulator Length = 140 Score = 28.5 bits (62), Expect = 1.1 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 25 ELSLTRGQYLYLVRVCENPGI--IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 82 EL T YL + E G+ ++ +IAE + T ++ + R+E G + D Sbjct: 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD--- 59 Query: 83 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQ--GLSEVEISQLADYLVRMRKNVSEDWE 140 + + TEKG+ + ++R+++ + ++ + GL E+ A R +SED E Sbjct: 60 ---RHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEA---CRWEHVMSEDVE 113
>pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Maritima Iclr pdb|1MKM|B Chain B, Crystal Structure Of The Thermotoga Maritima Iclr Length = 249 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 39 VCENPGIIQ-EKIAELIKVDRTTAARAIKRLEEQGFIYRQED 79 + +NPG + +IAE + + A + + LEE+GF+ R++D Sbjct: 17 IVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD 58
>pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2G|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. pdb|2A2U|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex With A Hyaline Droplet Inducer. Length = 181 Score = 25.8 bits (55), Expect = 7.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 38 RVCENPGIIQEKIAELIKVDRTTAAR 63 ++CE GI ++ I +L K DR AR Sbjct: 155 KLCEAHGITRDNIIDLTKTDRCLQAR 180
>pdb|1KU9|A Chain A, X-Ray Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphylococcus Aureus pdb|1KU9|B Chain B, X-Ray Structure Of A Methanococcus Jannaschii Dna-Binding Protein: Implications For Antibiotic Resistance In Staphylococcus Aureus Length = 152 Score = 25.4 bits (54), Expect = 9.5 Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 34 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFI 74 +Y + + + I E +K+ + + ++K+LEE GF+ Sbjct: 31 VYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFV 71
>pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1 Length = 159 Score = 25.4 bits (54), Expect = 9.5 Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 37 VRVCENPGIIQEKIAELIKVDR 58 V++ + GI++E I +L K+DR Sbjct: 132 VKIVQKRGIVKENIIDLTKIDR 153
Database: PDB protein database Posted date: Sep 29, 2003 10:58 PM Number of letters in database: 10,828,398 Number of sequences in database: 45,671 Lambda K H 0.317 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,675 Number of Sequences: 45671 Number of extensions: 5804 Number of successful extensions: 20 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 3 length of query: 150 length of database: 10,828,398 effective HSP length: 88 effective length of query: 62 effective length of database: 6,809,350 effective search space: 422179700 effective search space used: 422179700 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
