BLASTP 2.2.6 [Apr-09-2003]
RID: 1064913930-2918-3712.BLASTQ3 Query= T0163 Glycin oxidase, B. subtilis (369 letters) Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports
Query= T0163 Glycin oxidase, B. subtilis (369 letters)
Database: PDB protein database 45,671 sequences; 10,828,398 total letters Taxonomy reports
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|30749609|pdb|1NG3|A Chain A, Complex Of Thio (Glycine Ox... 735 0.0 gi|12084636|pdb|1EL5|A Chain A, Complex Of Monomeric Sarcos... 40 0.001 gi|23200321|pdb|1L9C|A Chain A, Role Of Histidine 269 In Ca... 40 0.001 gi|11513459|pdb|1C0K|A Chain A, Crystal Structure Analysis ... 38 0.006 gi|12084642|pdb|1EL9|A Chain A, Complex Of Monomeric Sarcos... 37 0.013 gi|1633194|pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pi... 35 0.039 gi|2624595|pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex... 35 0.039 gi|6137474|pdb|2NAP|A Chain A, Dissimilatory Nitrate Reduct... 33 0.18 Alignments
Related Structures Score E Sequences producing significant alignments: (bits) Value gi|30749609|pdb|1NG3|A Chain A, Complex Of Thio (Glycine Ox... 735 0.0 gi|12084636|pdb|1EL5|A Chain A, Complex Of Monomeric Sarcos... 40 0.001 gi|23200321|pdb|1L9C|A Chain A, Role Of Histidine 269 In Ca... 40 0.001 gi|11513459|pdb|1C0K|A Chain A, Crystal Structure Analysis ... 38 0.006 gi|12084642|pdb|1EL9|A Chain A, Complex Of Monomeric Sarcos... 37 0.013 gi|1633194|pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pi... 35 0.039 gi|2624595|pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex... 35 0.039 gi|6137474|pdb|2NAP|A Chain A, Dissimilatory Nitrate Reduct... 33 0.18
>gi|30749609|pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine gi|30749610|pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine gi|30749611|pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis gi|30749612|pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis Length = 390 Score = 735 bits (1898), Expect = 0.0 Identities = 354/369 (95%), Positives = 354/369 (95%) Query: 1 MKRHYEXXXXXXXXXXXXXXYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERD 60 MKRHYE YYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERD Sbjct: 22 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERD 81 Query: 61 AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWY 120 AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWY Sbjct: 82 AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWY 141 Query: 121 SKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD 180 SKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD Sbjct: 142 SKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD 201 Query: 181 GEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTL 240 GEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTL Sbjct: 202 GEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTL 261 Query: 241 YHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAG 300 YHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLP IQNMKVDRFWAG Sbjct: 262 YHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPPIQNMKVDRFWAG 321 Query: 301 LRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFR 360 LRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFR Sbjct: 322 LRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFR 381 Query: 361 IDRKEAVQI 369 IDRKEAVQI Sbjct: 382 IDRKEAVQI 390
>gi|12084636|pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Dimethylglycine gi|12084637|pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Dimethylglycine gi|12084638|pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methytelluro]acetate gi|12084639|pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methytelluro]acetate gi|12084640|pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylseleno]cetate gi|12084641|pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylseleno]cetate gi|20664323|pdb|1L9F|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently Flavinylated Amine Oxidizing Enzyme gi|20664324|pdb|1L9F|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently Flavinylated Amine Oxidizing Enzyme gi|23200325|pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase gi|23200326|pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase Length = 389 Score = 40.4 bits (93), Expect = 0.001 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%) Query: 155 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLG 214 +AY + A+ GA++ HT V + +++ I+T +G A+ ++V+ G W+ +L Sbjct: 154 RAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN 213 Query: 215 LNNAFLPVKGEC------LSVWNDDIPLTKTLY---HDHCYIVPR------KSGRLVVGA 259 L+ P + S +++DI + + Y P K G G Sbjct: 214 LDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQ 273 Query: 260 TMKP-------GDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYI 312 + P G + E D L + +++ +P N ++ R + T D I Sbjct: 274 KIDPDTINREFGVYPE--DESNLRAFLEE---YMPG-ANGELKRGAVCMYTKTLDEHFII 327 Query: 313 GRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR---KEAVQ 368 HPE S ++ AAG +G + G ++S L + + D + F I+R KE++Q Sbjct: 328 DLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHD-ISIFSINRPALKESLQ 385
>gi|23200321|pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase gi|23200322|pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase gi|23200323|pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase gi|23200324|pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase Length = 389 Score = 40.4 bits (93), Expect = 0.001 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%) Query: 155 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLG 214 +AY + A+ GA++ HT V + +++ I+T +G A+ ++V+ G W+ +L Sbjct: 154 RAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN 213 Query: 215 LNNAFLPVKGEC------LSVWNDDIPLTKTLY---HDHCYIVPR------KSGRLVVGA 259 L+ P + S +++DI + + Y P K G G Sbjct: 214 LDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYNTFGQ 273 Query: 260 TMKP-------GDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYI 312 + P G + E D L + +++ +P N ++ R + T D I Sbjct: 274 KIDPDTINREFGVYPE--DESNLRAFLEE---YMPG-ANGELKRGAVCMYTKTLDEHFII 327 Query: 313 GRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR---KEAVQ 368 HPE S ++ AAG +G + G ++S L + + D + F I+R KE++Q Sbjct: 328 DLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHD-ISIFSINRPALKESLQ 385
>gi|11513459|pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In Complex With L-Lactate gi|11513461|pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At Very High Resolution Reveal The Chemical Reacttion Mechanism Of Flavin Dehydrogenation gi|11513463|pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-Alanine And A Partially Occupied Biatomic Species gi|20149793|pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With Two Anthranylate Molecules Length = 363 Score = 38.1 bits (87), Expect = 0.006 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 246 YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLP------AIQNMKVDRFWA 299 YI+PR G ++ G T GDW + + ++ ++K + P I+ ++V R Sbjct: 225 YIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNV 284 Query: 300 GLRPGTKDG 308 GLRP + G Sbjct: 285 GLRPARRGG 293
>gi|12084642|pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylthio]acetate gi|12084643|pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylthio]acetate gi|12084644|pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Pyrrole-2-Carboxylate gi|12084645|pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Pyrrole-2-Carboxylate Length = 389 Score = 37.0 bits (84), Expect = 0.013 Identities = 18/69 (26%), Positives = 37/69 (53%) Query: 155 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLG 214 +AY + A+ GA++ HT V + +++ I+T +G A+ ++V+ G W+ +L Sbjct: 154 RAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSXGAWNSKLLSKLN 213 Query: 215 LNNAFLPVK 223 L+ P + Sbjct: 214 LDIPLQPYR 222
Score = 31.2 bits (69), Expect = 0.62 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 305 TKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR- 363 T D I HPE S ++ AAG +G + G ++S L + + D + F I+R Sbjct: 320 TLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHD-ISIFSINRP 378 Query: 364 --KEAVQ 368 KE++Q Sbjct: 379 ALKESLQ 385
>gi|1633194|pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney gi|1633195|pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney gi|1633196|pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney gi|1633197|pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney gi|1633198|pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney gi|1633199|pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney gi|1633200|pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney gi|1633201|pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney gi|2098368|pdb|1AA8|A Chain A, Porcine Kidney D-Amino Acid Oxidase gi|2098369|pdb|1AA8|B Chain B, Porcine Kidney D-Amino Acid Oxidase gi|2392241|pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392242|pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392243|pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392244|pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392245|pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392246|pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392247|pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392248|pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney With 3-Methyl-2-Oxo-Valeric Acid gi|2392255|pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392256|pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392257|pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392258|pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392259|pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392260|pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392261|pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp gi|2392262|pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex With Imino-Trp Length = 347 Score = 35.4 bits (80), Expect = 0.039 Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 195 ANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSV---WNDDIPLTKTL---YHDHCYIV 248 A+ ++ +GVW+G+ L + P +G+ + V W + +T L ++ YI+ Sbjct: 175 ADVIINCTGVWAGV----LQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYII 230 Query: 249 PRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRP 303 P + +G T + G+W+E ++ ++ + + P +++ K+ + G RP Sbjct: 231 PGLQA-VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRP 284
>gi|2624595|pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate gi|2624596|pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate gi|11514353|pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate Of Porcine Kidney D-Amino Acid Oxidase gi|11514354|pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate Of Porcine Kidney D-Amino Acid Oxidase Length = 340 Score = 35.4 bits (80), Expect = 0.039 Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 195 ANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSV---WNDDIPLTKTL---YHDHCYIV 248 A+ ++ +GVW+G+ L + P +G+ + V W + +T L ++ YI+ Sbjct: 175 ADVIINCTGVWAGV----LQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYII 230 Query: 249 PRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRP 303 P + +G T + G+W+E ++ ++ + + P +++ K+ + G RP Sbjct: 231 PGLQA-VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRP 284
>gi|6137474|pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio Desulfuricans Length = 723 Score = 33.1 bits (74), Expect = 0.18 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 88 IRQHNGGMFKLAFSEE--DVLQLRQMDDLD-----SVSWYSKEEVLEKEPYASGDIFGAS 140 +R+H GG + +E D++ R +D SV+WY + L +E Y + IF Sbjct: 68 VRRHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGG 127 Query: 141 FIQDDVHVEP 150 F ++V P Sbjct: 128 FGTNNVDGNP 137
Database: PDB protein database Posted date: Sep 29, 2003 10:58 PM Number of letters in database: 10,828,398 Number of sequences in database: 45,671 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,613,908 Number of Sequences: 45671 Number of extensions: 113629 Number of successful extensions: 223 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 214 Number of HSP's gapped (non-prelim): 11 length of query: 369 length of database: 10,828,398 effective HSP length: 99 effective length of query: 270 effective length of database: 6,306,969 effective search space: 1702881630 effective search space used: 1702881630 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)
