[ Fold Library: v.1.53.8925 ] [ Sequence Database: v.2003.10.16 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for T0157____

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Fri Oct 31 17:04:11 GMT 2003


Description:T0157____
Remote Host:cocacola.bioinf.uni-leipzig.de
Remote Address:139.18.75.90
E-mail Address:stefanseemann@web.de
Input Format:single
Query Length:138
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment c1iv0a_ 28%i.d. 98 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 1.81e-06 1n/a not in SCOP 1.53 PDB header: structural genomics, unknown function. Chain: A: PDB Molecule:hypothetical protein;. . PDBTitle: solution structure of the yqgf-family protein (n-terminal2 fragment) . - 1iv0 a 0.000 R1D
View Alignment d1hjra_ 17%i.d. 158 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.163 1n/a Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like RuvC resolvase RuvC resolvase Escherichia coli 1hjr a: 0.500 1D
View Alignment c1m5ta_ 15%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 1.77 1n/a Alpha and beta proteins (a/b) Flavodoxin-like CheY-like homol. to d1ntr__ - - 1m5t a 0.000 R1D
View Alignment d1a2oa1 19%i.d. 140 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.34 1n/a Alpha and beta proteins (a/b) Flavodoxin-like CheY-like CheY-related Methylesterase CheB, N-terminal domain Salmonella typhimurium 1a2o a:1-140 0.596 R1D
View Alignment d1b9da_ 17%i.d. 143 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.84 1n/a Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase HIV-1 integrase, catalytic domain Human immunodeficiency virus, type 1 1b9d a: 0.500 R1D
View Alignment c1ioia_ 22%i.d. 208 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.13 1n/a Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) homol. to d1a2za_ - - 1ioi a 0.000 R1D
View Alignment c1g17a_ 15%i.d. 168 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.2 1n/a Alpha and beta proteins (a/b) P-loop containing nucleotide triphosphate hydrolases P-loop containing nucleotide triphosphate hydrolases homol. to d3raba_ - - 1g17 a 0.000 R1D
View Alignment d1b74a1 22%i.d. 105 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.41 1n/a Alpha and beta proteins (a/b) ATC-like Glutamate racemase Glutamate racemase Glutamate racemase Bacteria (Aquifex pyrophilus) 1b74 a:1-105 0.000 R1D
View Alignment d1rvv1_ 23%i.d. 154 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.41 1n/a Alpha and beta proteins (a/b) beta-subunit of the lumazine synthase/riboflavin synthase complex beta-subunit of the lumazine synthase/riboflavin synthase complex beta-subunit of the lumazine synthase/riboflavin synthase complex beta-subunit of the lumazine synthase/riboflavin synthase complex Bacillus subtilis 1rvv 1: 0.000 R1D
View Alignment d1fgs_1 16%i.d. 111 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.44 1n/a Alpha and beta proteins (a/b) Glutamate ligase domain Glutamate ligase domain Folylpolyglutamate synthetase, C-terminal domain Folylpolyglutamate synthetase, C-terminal domain Lactobacillus casei 1fgs 297-425 0.000 R1D
View Alignment c1mvoa_ 21%i.d. 121 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.87 1n/a Alpha and beta proteins (a/b) Flavodoxin-like CheY-like homol. to d1ntr__ - - 1mvo a 0.000 R1D
View Alignment d1cxqa_ 10%i.d. 143 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.19 1n/a Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase ASV integrase, catalytic domain Avian sarcoma virus, Rous sarcoma virus, Schmidt-Ruppin strain B 1cxq a: 0.500 3D
View Alignment c1gdta_ 16%i.d. 183 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.54 1n/a not in SCOP 1.53 PDB header: complex (site-specific recombinase/dna). Chain: A: PDB Molecule:gamma-delta resolvase; 1gdt 6. . PDBTitle: crystal structure of a site-specific recombinase, 1gdt 32 gamma-delta resolvase complexed with a 34 bp cleavage site 1gdt 4 . - 1gdt a 0.000 R1D
View Alignment c1o4va_ 18%i.d. 169 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.01 1n/a not in SCOP 1.53 PDB header: lyase. Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase. . PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase (pure) (tm0446) from thermotoga maritima at3 1.77 a resolution . - 1o4v a 0.000 R1D
View Alignment d1a5z_1 13%i.d. 140 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.09 1n/a Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Lactate & malate dehydrogenases, N-terminal domain Lactate dehydrogenase Thermotoga maritima 1a5z 22-163 0.500 R1D
View Alignment c1j24a_ 14%i.d. 133 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.18 1n/a not in SCOP 1.53 PDB header: hydrolase. Chain: A: PDB Molecule:atp-dependent rna helicase, putative;. . PDBTitle: crystal structure of archaeal xpf/mus81 homolog, hef from2 pyrococcus furiosus, nuclease domain, ca cocrystal . - 1j24 a 0.000 R1D
View Alignment d1lam_1 15%i.d. 159 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.56 1n/a Alpha and beta proteins (a/b) Leucine aminopeptidase, N-terminal domain Leucine aminopeptidase, N-terminal domain Leucine aminopeptidase, N-terminal domain Leucine aminopeptidase, N-terminal domain Bovine (Bos taurus) 1lam 1-159 0.500 R1D
View Alignment c1sfe__ 17%i.d. 165 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.73 1n/a not in SCOP 1.53 PDB header: dna-binding protein. Chain:NULL;: PDB Molecule:ada o6-methylguanine-dna methyltransferase; . PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia2 coli . - - 1sfe - 0.000 R1D
View Alignment d1tfr_1 16%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 6.85 1n/a All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain T4 RNase H Bacteriophage T4 1tfr 183-305 0.378 1D
View Alignment d1sfe_2 21%i.d. 81 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.46 1n/a Alpha and beta proteins (a/b) Ribonuclease H-like motif Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase domain Ada DNA repair protein Escherichia coli 1sfe 12-92 0.500 R1D