[ Fold Library: v.1.53.8838 ] [ Sequence Database: v.2003.9.16 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for t0142____

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Fri Oct 3 14:50:24 BST 2003


Description:t0142____
Remote Host:cocacola.bioinf.uni-leipzig.de
Remote Address:139.18.75.90
E-mail Address:jan_buck@web.de
Input Format:single
Query Length:282
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Hemolysis27
Hydrolase24
Signal17
Prenylation15
Lipoprotein13
Membrane13
Endocytosis13
Toxin9
Alternative splicing8
Repeat7

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment c1i9ya_ 25%i.d. 336 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 6.46e-16 0.312
5-phosphatase,HYDROLASE 		0.33 Hydrolase, Prenylation, Lipoprotein, Membrane, not in SCOP 1.53 PDB header: hydrolase. Chain: A: PDB Molecule:phosphatidylinositol phosphate phosphatase;. . PDBTitle: crystal structure of inositol polyphosphate 5-phosphatase2 domain (ipp5c) of spsynaptojanin . - 1i9y a 0.000 R1D
View Alignment d1ako__ 14%i.d. 268 View Model with Rasmol or Shift-Click to Save Coordinates
Chime ViewRasmol Model with SidechainsChime Model with Sidechains
 0.0183 0.943
3,HYDROLASE 		0.67 Hydrolase, Hemolysis, Signal, Alpha and beta proteins (a+b) DNase I-like DNase I-like DNase I-like DNA-repair enzyme exonuclease III Escherichia coli 1ako - 0.656 1D
View Alignment d2dnja_ 13%i.d. 253 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 1.82 0.969
binds,HYDROLASE 		0.78 Hydrolase, Signal, Alpha and beta proteins (a+b) DNase I-like DNase I-like DNase I-like Deoxyribonuclease I Bovine (Bos taurus) 2dnj a: 0.804 R1D
View Alignment d1bix__ 13%i.d. 275 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 1.97 0.923
3,role,HYDROLASE 		0.62 Toxin, Hydrolase, Hemolysis, Signal, Alpha and beta proteins (a+b) DNase I-like DNase I-like DNase I-like DNA repair endonuclease Hap1 Human (Homo sapiens) 1bix - 0.758 3D
View Alignment c1j6wa_ 14%i.d. 155 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 18.3 0.921
expression,2 		1.00 not in SCOP 1.53 PDB header: signaling protein. Chain: A: PDB Molecule:autoinducer-2 production protein luxs;. . PDBTitle: crystal structure of haemophilus influenzae luxs . - 1j6w a 0.000 1D
View Alignment d1ei1a1 13%i.d. 172 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 22.5 0.92
including 		1.00 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like DNA gyrase/MutL, second domain DNA gyrase B Escherichia coli 1ei1 a:221-392 0.500 3D
View Alignment c1ekea_ 14%i.d. 219 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 23.6 0.973
HYDROLASE 		0.81 Hydrolase, not in SCOP 1.53 PDB header: hydrolase. Chain: A: PDB Molecule:ribonuclease hii;. . PDBTitle: crystal structure of class ii ribonuclease h (rnase hii)2 with mes ligand . - 1eke a 0.000 R1D
View Alignment d1ceqa2 10%i.d. 166 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 25.5 11.00 Alpha and beta proteins (a+b) Lactate & malate dehydrogenases, C-terminal domain Lactate & malate dehydrogenases, C-terminal domain Lactate & malate dehydrogenases, C-terminal domain Lactate dehydrogenase Malarial parasite (Plasmodium falciparum) 1ceq a:164-329 0.573 R1D
View Alignment d3nul__ 16%i.d. 127 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 26.3 0.945
binding,binds 		1.00 Alpha and beta proteins (a+b) Profilin-like Profilin (actin-binding protein) Profilin (actin-binding protein) Profilin (actin-binding protein) Mouse-ear cress (Arabidopsis thaliana) 3nul - 0.754 1D
View Alignment d1aa6_1 10%i.d. 133 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 26.5 0.866
codon 		0.93 Repeat, Signal, All beta proteins Double psi beta-barrel ADC-like Formate dehydrogenase/DMSO reductase, C-terminal domain Formate dehydrogenase H Escherichia coli 1aa6 565-715 0.709 R1D
View Alignment d1dyr__ 16%i.d. 205 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 27 10.99 Repeat, Alpha and beta proteins (a/b) Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases, eukaryotic type Fungus (Pneumocystis carinii) 1dyr - 0.800 3D
View Alignment d1ldm_2 17%i.d. 169 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 28 0.676
predominantly,heart,muscle,tissues 		1.00 Alpha and beta proteins (a+b) Lactate & malate dehydrogenases, C-terminal domain Lactate & malate dehydrogenases, C-terminal domain Lactate & malate dehydrogenases, C-terminal domain Lactate dehydrogenase Dogfish (Squalus acanthias) 1ldm 161-329 0.683 1D
View Alignment d1cipa2 13%i.d. 195 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 29.2 0.881
3,1,binding 		0.93 Lipoprotein, Alternative splicing, Alpha and beta proteins (a/b) P-loop containing nucleotide triphosphate hydrolases P-loop containing nucleotide triphosphate hydrolases G proteins Transducin (alpha subunit) Rat (Rattus rattus) 1cip a:32-60,a:182-347 0.500 3D
View Alignment d1amoa3 12%i.d. 160 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 29.4 0.949
2,binds 		0.94 Repeat, Membrane, Lipoprotein, Alternative splicing, Alpha and beta proteins (a/b) Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain NADPH-cytochrome p450 reductase NADPH-cytochrome p450 reductase Rat (Rattus norvegicus) 1amo a:519-678 1.000 3D
View Alignment d8dfr__ 16%i.d. 186 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 31.1 11.00 Alpha and beta proteins (a/b) Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases, eukaryotic type Chicken (Gallus gallus) 8dfr - 0.715 3D
View Alignment d1d5ya3 14%i.d. 169 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 31.2 0.94
binding,binds 		1.00 Alpha and beta proteins (a+b) Probable bacterial effector-binding domain Probable bacterial effector-binding domain Rob transcription factor, C-terminal domain Rob transcription factor, C-terminal domain Escherichia coli 1d5y a:122-294 0.000 1D
View Alignment c1b08a_ 14%i.d. 152 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 32.4 0.918
1,2,REPEAT,binds 		0.83 Repeat, Toxin, Endocytosis, Membrane, Alternative splicing, Signal, not in SCOP 1.53 PDB header: sugar binding protein. Chain: A: PDB Molecule:lung surfactant protein d;. . PDBTitle: lung surfactant protein d (sp-d) (fragment) . - 1b08 a 0.000 R1D
View Alignment d1etu__ 14%i.d. 177 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 32.6 0.857
position,shown,binding,role 		1.00 Alpha and beta proteins (a/b) P-loop containing nucleotide triphosphate hydrolases P-loop containing nucleotide triphosphate hydrolases G proteins Elongation factor Tu (EF-Tu), N-terminal (G) domain Escherichia coli 1etu - 0.500 3D
View Alignment d1atza_ 8%i.d. 184 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 33.2 0.933
c-terminal,3,REPEAT 		0.84 Repeat, Hydrolase, Alternative splicing, Signal, Alpha and beta proteins (a/b) Integrin A (or I) domain Integrin A (or I) domain Integrin A (or I) domain von Willebrand factor A3 domain Human (Homo sapiens) 1atz a: 0.785 3D
View Alignment d1dfma_ 16%i.d. 218 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 33.3 1n/a Alpha and beta proteins (a/b) Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease BglII Restriction endonuclease BglII Bacillus subtilis (synonym: Bacillus globigii) 1dfm a: 0.500 3D