BLASTP 2.2.6 [Apr-09-2003]

RID: 1065007176-20991-1879129.BLASTQ3

Query= T0142 Salivary nitrophorin, C. lectularius
         (282 letters)


Database: PDB protein database 
           45,671 sequences; 10,828,398 total letters

Taxonomy reports

Related Structures

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14277798|pdb|1I9Y|A  Chain A, Crystal Structure Of Inosit...    79   1e-15 
gi|494362|pdb|1MDC|   Fatty Acid Binding Protein (Manduca Se...    28   3.0   
gi|4929888|pdb|1B7F|A  Chain A, Sxl-Lethal ProteinRNA COMPLE...    28   4.2   
gi|4930239|pdb|3SXL|A  Chain A, Sex-Lethal Rna Recognition D...    28   5.2   

Alignments


>gi|14277798|pdb|1I9Y|A   Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
           Domain (Ipp5c) Of Spsynaptojanin
 gi|14277799|pdb|1I9Z|A   Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
           Domain (Ipp5c) Of Spsynaptojanin In Complex With
           Inositol (1,4)-Bisphosphate And Calcium Ion
          Length = 347

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 24/246 (9%)

Query: 53  KPQQGPACVKNFQS--LLTSKGYTKLKNTITETMGLTVYCLEKHLD-----QNTLKNETI 105
           K ++  +CVK   +    +  GY +L++       L ++C E  L      + T+K +T 
Sbjct: 80  KRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVK-KTG 138

Query: 106 IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDT-----RLDYSKKD 160
           +  V   K  G +   F   +    F TS ++          + Y T     R    +  
Sbjct: 139 LGGVSGNK--GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSI 196

Query: 161 DPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVT 219
              D++ W GD N R+          + Q  +  L  +DQL K+    K+F  ++E  +T
Sbjct: 197 FNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPIT 256

Query: 220 FKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLA 276
           F PTYKF   TD YD S     P+WTDR LY+      + P SY S+  Y  ++HRP+ A
Sbjct: 257 FPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG----ELVPHSYQSVPLY-YSDHRPIYA 311

Query: 277 KFRVTL 282
            +   +
Sbjct: 312 TYEANI 317



>gi|494362|pdb|1MDC|    Fatty Acid Binding Protein (Manduca Sexta) (Mfb2)
          Length = 133

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 185 SLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSAT 238
           SLV Q N DG +    L   K Q L        V+ KPT K + N D Y  ++T
Sbjct: 9   SLVKQENFDGFLKSAGLSDDKIQAL--------VSDKPTQKMEANGDSYSNTST 54



>gi|4929888|pdb|1B7F|A   Chain A, Sxl-Lethal ProteinRNA COMPLEX
 gi|4929889|pdb|1B7F|B   Chain B, Sxl-Lethal ProteinRNA COMPLEX
          Length = 168

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 111 DQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLF 167
           D +++  ++   T+ NKR   + +R   E +  TN    Y T L  +  DD  D +F
Sbjct: 57  DSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNL---YVTNLPRTITDDQLDTIF 110



>gi|4930239|pdb|3SXL|A   Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
           Melanogaster
 gi|4930240|pdb|3SXL|B   Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
           Melanogaster
 gi|4930241|pdb|3SXL|C   Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
           Melanogaster
          Length = 184

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 111 DQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLF 167
           D +++  ++   T+ NKR   + +R   E +  TN    Y T L  +  DD  D +F
Sbjct: 68  DSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNL---YVTNLPRTITDDQLDTIF 121






  Database: PDB protein database
    Posted date:  Sep 29, 2003 10:58 PM
  Number of letters in database: 10,828,398
  Number of sequences in database:  45,671
  
Lambda     K      H
   0.314    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,205
Number of Sequences: 45671
Number of extensions: 15500
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 1
length of query: 282
length of database: 10,828,398
effective HSP length: 96
effective length of query: 186
effective length of database: 6,443,982
effective search space: 1198580652
effective search space used: 1198580652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)